View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16105_low_40 (Length: 209)
Name: NF16105_low_40
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 38312719 - 38312894
Alignment:
| Q |
16 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttttcatgatagga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38312719 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttctcatgatagga |
38312818 |
T |
|
| Q |
116 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312819 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
38312894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 46922347 - 46922522
Alignment:
| Q |
16 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttttcatgatagga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46922347 |
atgaaagacattggtataaagaaaaatgttggatatagttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttctcatgatagga |
46922446 |
T |
|
| Q |
116 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46922447 |
actctgaaattcaggctatgctaggtaagctcagaggagggatgaaggaggctggttatgttcctgataccaatct |
46922522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 46890549 - 46890473
Alignment:
| Q |
53 |
gttggatagctgtaaaaaacagaatccatgttttccaagcaaaggatagttttcatgataggaactctgaaattcag |
129 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||| | |||||||||||||||| |
|
|
| T |
46890549 |
gttggattgctgtaaagaacagaatccatgttttccaagcaaatgatagttctcatgaaatgaactctgaaattcag |
46890473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University