View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16105_low_9 (Length: 453)
Name: NF16105_low_9
Description: NF16105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16105_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 4723880 - 4724014
Alignment:
| Q |
33 |
tatttattatcaaggttcacatcaatagtccaatttaaacaaatctcaatagttcatatatgtgaaacggtgataacgagccagattcacacaatagaga |
132 |
Q |
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| T |
4723880 |
tatttattatcaaggttcacatcaatagtccaatttaaacaaatctcaatagttcatatatgtgaaaccgtgataacgagccagattcacacaatagaga |
4723979 |
T |
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| Q |
133 |
atcaaccacataatacattcaagtagggttcatgt |
167 |
Q |
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| T |
4723980 |
atcaaccacataatacattcaagtagggttcatgt |
4724014 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 4724143 - 4724237
Alignment:
| Q |
327 |
tcgtcaaagtcattttattttatcaggtgcatagacatatcaaataaggtgcagtataaaattagttcgcatgtacgtcaaacacaatgaagtat |
421 |
Q |
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| T |
4724143 |
tcgtcaaagtcatattattttatcaggtgcatagacatatcaaataaggtgcagtacaaaattagttcgcatgtacgtcaaacacaatgaagtat |
4724237 |
T |
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