View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_high_1 (Length: 802)
Name: NF16106_high_1
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 5 - 788
Target Start/End: Complemental strand, 30484349 - 30483570
Alignment:
| Q |
5 |
gagagagaagaaccatatacataatatgtacacatcatcatactttttataacaagaccatgctattattatcaacctcgaatctcattccttccatgtc |
104 |
Q |
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| T |
30484349 |
gagagataagaaccatatacataatatgtacacatcatcatactttttataacaagaccatgctattattatcaacctggaatctcattccttccatgtc |
30484250 |
T |
|
| Q |
105 |
tgatgaggccacaccatcatgatgatcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaacactactacaa |
204 |
Q |
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| T |
30484249 |
tgatgaggccacaccatcatgatgatcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaacactactacaa |
30484150 |
T |
|
| Q |
205 |
ttgttgtttgtttctttagaaaattgaagaagattcatcaaagaattattttggttctcatttaaatgacaatgatgggtggttgtcattgaagatgaga |
304 |
Q |
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| T |
30484149 |
ttgttgtttgtttctttagaaaattgaagaagattcatcaaagaattattttggttctcatttaaatgacaatgatgggt---tgtcattgaagatgaga |
30484053 |
T |
|
| Q |
305 |
aagaagcaaattggttatacccaattggcatggtttggttggttagggatgggactatagtctcatacatttcttgtggacttaatttggcattattttc |
404 |
Q |
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| T |
30484052 |
atgaagcaaattggttatacccaattggcatggtttggttggttagggatgggactatagtctcatacatttcttgtggacttaatttggcattattttc |
30483953 |
T |
|
| Q |
405 |
tgtcttgcctttatgaaatactctacacaaaacccagtcttcctgtaatcaacaaaagtttgaactaattagcaaaaataaatgtgaaaccaaaataact |
504 |
Q |
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| T |
30483952 |
tgtcttgcctttatgaaatactctacacaaaacccagtcttcctgtaatcaacaaaagtttgaactaattaacaaaaataaatgtgaaaccaaaataact |
30483853 |
T |
|
| Q |
505 |
agatttttaaagaagctttaacatcacacttaaaatacgtgagaatcatttcttttccacttatgaaaatattctattctatccaattcaatcaatgaca |
604 |
Q |
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| T |
30483852 |
agatttttaaagaagctttaacatcacacttaaaatacgtgagaatcatttcttttccacttatg-taatattctattctatccaattcaatcaatgaca |
30483754 |
T |
|
| Q |
605 |
acaataaatctcttaattaagatttggaccaaaaaagtcctcacatacacattgttttcctctatctcaaaaagatgctaaatccaatcactcctccaac |
704 |
Q |
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| T |
30483753 |
acaataaatctcttaattaagatttggaccaaaaaagtcctcacatacacattgttttcctctatctcaaaaagatgctaaatccaatcactcttccaac |
30483654 |
T |
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| Q |
705 |
tttctcaccttattttaaatagctagctcttgaattttgtttctacgttaagtttattnnnnnnncttaattagagattcttgt |
788 |
Q |
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| T |
30483653 |
tttctcaccttattttaaatagctagctcttgaattttgtttctacgtcaagtttattaaaaaaacttaattagagattcttgt |
30483570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 39014840 - 39014904
Alignment:
| Q |
130 |
tcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaac |
194 |
Q |
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| T |
39014840 |
tcttccaaatccatgttccacaagaatccatatccatcatcacctttggaactaatttgagtaac |
39014904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 494
Target Start/End: Original strand, 39015161 - 39015246
Alignment:
| Q |
409 |
ttgcctttatgaaatactctacacaaaacccagtcttcctgtaatcaacaaaagtttgaactaattagcaaaaataaatgtgaaac |
494 |
Q |
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| T |
39015161 |
ttgcttttgtgaaagactctacacaatacccagtcctcctgtgatcaacaaaaatttgacctaattaacaaatatatatgtaaaac |
39015246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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