View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_high_3 (Length: 539)
Name: NF16106_high_3
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 17 - 518
Target Start/End: Original strand, 36138613 - 36139114
Alignment:
| Q |
17 |
caaaggctatatctttatttaaattaagttagccaaacttatccttcatttttaggtttcagagcttcagacgaaaatagagaatgctggaggtgaaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36138613 |
caaaggctatatctttatttaaattaagttagccaaacttatccttcatttttaggtttcagagcttcagacgaaaatagagaatgctggaggtgaaaaa |
36138712 |
T |
|
| Q |
117 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctggatattgagaagaactttaaattcaatatgatgctgtgtctatactaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36138713 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctggatattgagaagaactttaaattcaatatgatgctgtgtctatactaat |
36138812 |
T |
|
| Q |
217 |
ggtacccatttactaggatattgacaagaccagctcagagattaaccgtcacaaggttcaaatagagacagggcaaaagatgatgaagaagttgactaaa |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
36138813 |
ggtacccatttactaagatattgacaagaccagctcagtgattaaccgtcacaaggttcaaatagagacagggaaaaagatgatgaagaagttggctaaa |
36138912 |
T |
|
| Q |
317 |
ggaatagaggattcgaaggagaaagaaaggttaactgaggagaaggaaaagttaaatggaaacatcaaagaaataaagcagaaaaaatctgctgttcaag |
416 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36138913 |
ggaatagaggattcgaagaagaaagaaaggttaactgaggaggaggaaaagttaaatggaaacatcaaagaaataaagcagaaaaaatctgctgttcaag |
36139012 |
T |
|
| Q |
417 |
agaattataagaaaacacaagaggttcttttccttgttcttttgcttgtctggttatgtaaattatgtgcctacataagtggtggcggtggtgattgtac |
516 |
Q |
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| T |
36139013 |
agaattataagaaaacacaagaggttcttttccttgttcttttgcttgtctggttatgtaaattatgtgcctacataagtggtggcggtggtgattgtac |
36139112 |
T |
|
| Q |
517 |
gt |
518 |
Q |
| |
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|| |
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| T |
36139113 |
gt |
36139114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 30819255 - 30819721
Alignment:
| Q |
17 |
caaaggctatatctttatttaaattaagttagccaaacttatccttcatttttaggtttcagagcttcagacgaaaatagagaatgctggaggtgaaaaa |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||| || | |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
30819255 |
caaaggctatatctttatttaacttaagttagtcaaatggattccccatttttaggtttcggagcttcagaagaaaatagagaatgctggaggtgaaaaa |
30819354 |
T |
|
| Q |
117 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctggatattgagaagaactttaaattcaatatgatgctgtgtctatactaat |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||| | |||||||||||| |
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| T |
30819355 |
ttaaaatctcagaagttgaaggtccagaaaattcagtctgtaagcatcctgtatattg---agaactttcaattcaatctgataccttgtctatactaaa |
30819451 |
T |
|
| Q |
217 |
ggtacccatttactaggatattgacaagaccagctcagagattaaccgtcacaaggttcaaatagagacagggcaaaagatgatgaagaagttgactaaa |
316 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
30819452 |
ggtacccattttctaggatattgacaaggccagctcagagatcaaccgtcataaggtccaaatagagacgggccaaaagatgatgaagaagttgactaag |
30819551 |
T |
|
| Q |
317 |
ggaatagaggattc---gaaggagaaagaaaggttaactgaggagaaggaaaagttaaatggaaacatcaaagaaataaagcagaaaaaatctgctgttc |
413 |
Q |
| |
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||||||||||| || |||||| |||||| ||||| | ||||||| |||||||||||| |||||| ||||||||||| |||||||| || |||||||| |
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| T |
30819552 |
ggaatagaggagtcaaagaaggaaaaagaacggttagccgaggagagggaaaagttaaaaggaaacttcaaagaaatagagcagaaagcatttgctgttc |
30819651 |
T |
|
| Q |
414 |
aagagaattataagaaaacacaagaggttcttttccttgttcttttgcttgtctggttatgtaaattatg |
483 |
Q |
| |
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|| |||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||| |||| |||| |
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|
| T |
30819652 |
aaaagaattatgagaaaacagaagaggttcttttccttgttcttttgcttttttggttatataaactatg |
30819721 |
T |
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