View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_high_4 (Length: 527)
Name: NF16106_high_4
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Complemental strand, 2348597 - 2348099
Alignment:
| Q |
11 |
cagagagaaaaaaggttcttccaaactcacttattcaaagaatgatcaacattttgcagatatgttgttgaagaaattgatgaatggtaattcagataaa |
110 |
Q |
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| T |
2348597 |
cagagagaaaaaaggttcttccaaactcacttattcaaagaatgatcaacattttgcagatatgttgttgaagaaattgatgaatggtaattcagataaa |
2348498 |
T |
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| Q |
111 |
actaatcacaaaaacagtaatgataaagtattgtggccaattggtgtgttgttaggatccaaagattaccaagtgaggagaagattgggaagggggaagg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348497 |
actaatcacaaaaacagtaatgataaagtattgtggccaattggtgttttgttaggatccaaagattaccaagtgaggagaagattgggaagggggaagg |
2348398 |
T |
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| Q |
211 |
aatttaaggaaattcaatggttaggacaaagttttgctctgaggcattttcttggggagagagaagcttatgaaaatgagatttccaatttgttatcact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348397 |
aatttaaggaaattcaatggttaggacaaagttttgctctgaggcattttcttggggagagagaagcttatgaaaatgagatttccaatttgttatcact |
2348298 |
T |
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| Q |
311 |
ttctcacccaaacatattgcaatatctatgcggtttttatgacgaagagaagaaagagttttctctcgtgacggagttgatgaacaaggatttgtggaca |
410 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348297 |
ttctcacccaaacatattgcaatatctatgtggtttttatgacgaagagaagaaagagttttctctcgtgacggagttgatgaacaaggatttgtggaca |
2348198 |
T |
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| Q |
411 |
tacatgagagagaattgtggtccaaggagacagattttgttctctatacctgtagtggttgatctcatgcttcaaatggctagaggcattgaatatctc |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348197 |
tacatgagagagaattgtggtccaaggagacagattttgttctctatacctgtagtggttgatctcatgcttcaaatggctagaggcattgaatatctc |
2348099 |
T |
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