View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_high_6 (Length: 432)
Name: NF16106_high_6
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 33514529 - 33514293
Alignment:
| Q |
18 |
aaaattggttcactttgttcagctcatcatcaagcatcgcaaaaaacacacgtacctgtgaatagtaaaaaggatatttcacacacacatatatatattg |
117 |
Q |
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| T |
33514529 |
aaaattggttcaccttgtttagctcatcatcaagcatcgcaaaaaacacacgtacctgtgaatagtaaaaaggatatttcacacacacatatatatattg |
33514430 |
T |
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| Q |
118 |
atgtaagtccaaagatgtaaatacaagaagttatgaagcttacctcatcctcttccgaaaataattgtacaagctctgtttggtatatttcttctccgct |
217 |
Q |
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| T |
33514429 |
atgtaagtccaaaaatgtaaatacaagaagttatgaagcctacctcatcctcttccgaaaataattgtacaagctctgtttggtatatttcttctccgct |
33514330 |
T |
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| Q |
218 |
gccttttatggnnnnnnncctcacctacaccaatcag |
254 |
Q |
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| T |
33514329 |
gccttttatggtttttttcctcacctacaccaatcag |
33514293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 33514141 - 33514093
Alignment:
| Q |
375 |
gctgctcactcttcaaaaataaaaattatgctgcttattttagaattat |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33514141 |
gctgctcactcttcaaaaataaaaattatgctgcttattttagaattat |
33514093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 44064118 - 44064166
Alignment:
| Q |
146 |
agttatgaagcttacctcatcctcttccgaaaataattgtacaagctct |
194 |
Q |
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| T |
44064118 |
agttatgaagcctacctcatcctcctccgaaaaaaattgcacaagctct |
44064166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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