View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_high_7 (Length: 422)
Name: NF16106_high_7
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_high_7 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 26677589 - 26677986
Alignment:
| Q |
17 |
agtttgagtttgaagaattttgatggagtttgatttgttggagtatggatgaaaatgtaaggaaataagtccgaaagaaaatggtgatttgtgtttcttt |
116 |
Q |
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| T |
26677589 |
agtttgagtttgaagaattttgatggagtttgatttgttggaatatggatgaaaatgtaaggaaataagcccgaaagaaaatggtgatttgtgtttcttt |
26677688 |
T |
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| Q |
117 |
atttgtatgtattcaaaatggatcgtttcgtaaattccaatccaaatcatacggttcttaactcgcgtttccaaacgaactggtcatgattccagatggg |
216 |
Q |
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| T |
26677689 |
ttttgtatgtattcaaaatggatcgtttcgtaaattccaatccaaatcatacggttcttaactcgcgttcccaaacgaactggtcatgattccagatggg |
26677788 |
T |
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| Q |
217 |
gaccgacatttcaaggtgctcgtgagcaattaaatgtttttaaaaagcaattttaattttgatgggattagaatcccaagcccaacccgcttccttttga |
316 |
Q |
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| T |
26677789 |
gaccgacatttcaaggtgctcgtgagcaattaaatgtttttaaaaagcaattttaattttgatgggattagaatctcaagcccaacccgcttccttttga |
26677888 |
T |
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| Q |
317 |
ggtagcccattctcattttcactnnnnnnnnnnnnnctcgtttctgaaaaatgtaataaaaccctaaaacaccaaaacgaaggtctttttcctttgct |
414 |
Q |
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| T |
26677889 |
agtagcccattctcattttcactaaggaaaaaaaaactcgtttctgaaaaatgtaataaaaccctaaaacaccaaaacgaaggtctttttcctttgct |
26677986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 1256374 - 1256442
Alignment:
| Q |
18 |
gtttgagtttgaagaattttgatggagtttgatttgttggagtatggatgaaaa-tgtaaggaaataag |
85 |
Q |
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| T |
1256374 |
gtttgagtttgaagaattttgtttgagtttgatttgttggagtatgaaggaaaagtgtaagaaaataag |
1256442 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 16407452 - 16407411
Alignment:
| Q |
20 |
ttgagtttgaagaattttgatggagtttgatttgttggagta |
61 |
Q |
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| T |
16407452 |
ttgagtttgaagaattttgatggattttaatttgttggagta |
16407411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 53087308 - 53087266
Alignment:
| Q |
18 |
gtttgagtttgaagaattttgatggagtttgatttgttggagt |
60 |
Q |
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| T |
53087308 |
gtttaagtttgacgaattttgatggggtttgatttgttggagt |
53087266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 10892958 - 10893023
Alignment:
| Q |
18 |
gtttgagtttgaagaattttgatggagtttgatttgttggagtatgg-atgaaaatgtaaggaaat |
82 |
Q |
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| T |
10892958 |
gtttgagtttgacgaattttgttggtgtttgatgtgttggagtagggaaggaaaatgtaagaaaat |
10893023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 7900224 - 7900183
Alignment:
| Q |
20 |
ttgagtttgaagaattttgatggagtttgatttgttggagta |
61 |
Q |
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| T |
7900224 |
ttgagtttgaagatttttgatggggtttgatttattggagta |
7900183 |
T |
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Target: scaffold0318 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 4605 - 4645
Alignment:
| Q |
25 |
tttgaagaattttgatggagtttgatttgttggagtatgga |
65 |
Q |
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| T |
4605 |
tttgaagaaatttgatggaggttgatttgttggagtttgga |
4645 |
T |
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