View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_high_9 (Length: 289)
Name: NF16106_high_9
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 29069319 - 29069042
Alignment:
| Q |
12 |
ataggtcggcacattctattctcatcccaagttgtcacgcatatagattcattcataatgttcatgatttaggaagaaaaactaacagaagaggagaaga |
111 |
Q |
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| T |
29069319 |
atagttcggcacattctattctcatcccaagttgtcacacatatagattcattgataatgttcatgatttaggaagaaaaactaacacaagaggagaaga |
29069220 |
T |
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| Q |
112 |
aagaatagagtacctgcgataatgcacgggcattaaccctcctttccaaatagcaatcttctcaaaagcttcaaccggaagcacaaaatgctgcttagga |
211 |
Q |
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| T |
29069219 |
aagaatagagtacctgcgataatgcacgggcatgttacctcctttccaaatagcaatcttctcaaaagcttcaaccggaagcacaaaatgctgcttagga |
29069120 |
T |
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| Q |
212 |
ggattacaatatccaccatcactctcagcatcaaacccataattaggagcacaaaaactcgtagcagtaacaacaaca |
289 |
Q |
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| T |
29069119 |
ggattacaatatccaccgtcactctcagcatcaaacccataattaggagcacaaaaactcgtagcagtaacaacaaca |
29069042 |
T |
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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 284
Target Start/End: Original strand, 32825770 - 32825898
Alignment:
| Q |
153 |
ctttccaaatagcaatcttctcaaaagcttcaaccggaagcacaaaatgctgcttaggaggattacaatatccaccatcactctcagcatcaaacccata |
252 |
Q |
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||||||||||||| |||||||||||||| |||| ||||| |||||||||| |||||||||||||||| ||||| ||| ||| | ||||||||| |
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| T |
32825770 |
ctttccaaatagcgatcttctcaaaagcatcaataggaagaacaaaatgcttattaggaggattacaatgtccac---caccttcaaccgtaaacccata |
32825866 |
T |
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| Q |
253 |
attaggagcacaaaaactcgtagcagtaacaa |
284 |
Q |
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| T |
32825867 |
attcggcgcacagaaattcgtagcagtaacaa |
32825898 |
T |
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