View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_low_13 (Length: 224)
Name: NF16106_low_13
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 33514529 - 33514334
Alignment:
| Q |
18 |
aaaattggttcactttgttcagctcatcatcaagcatcgcaaaaaacacacgtacctgtgaatagtaaaaaggatatttcacacacacatatatatattg |
117 |
Q |
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| T |
33514529 |
aaaattggttcaccttgtttagctcatcatcaagcatcgcaaaaaacacacgtacctgtgaatagtaaaaaggatatttcacacacacatatatatattg |
33514430 |
T |
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| Q |
118 |
atgtaagtccaaagatgtaaatacaagaagttatgaagcttacctcatcctcttccgaaaataattgtacaagctctgtttggtatatttcttctc |
213 |
Q |
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| T |
33514429 |
atgtaagtccaaaaatgtaaatacaagaagttatgaagcctacctcatcctcttccgaaaataattgtacaagctctgtttggtatatttcttctc |
33514334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 44064118 - 44064166
Alignment:
| Q |
146 |
agttatgaagcttacctcatcctcttccgaaaataattgtacaagctct |
194 |
Q |
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| T |
44064118 |
agttatgaagcctacctcatcctcctccgaaaaaaattgcacaagctct |
44064166 |
T |
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