View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16106_low_14 (Length: 214)
Name: NF16106_low_14
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 36138938 - 36139114
Alignment:
| Q |
17 |
aaaggttaactgaggagaaggaaaagttaaatggaaacatcaaagaaataaagcagaaaaaatctgctgttcaagagaattataagaaaacacaagaggt |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36138938 |
aaaggttaactgaggaggaggaaaagttaaatggaaacatcaaagaaataaagcagaaaaaatctgctgttcaagagaattataagaaaacacaagaggt |
36139037 |
T |
|
| Q |
117 |
tcttttccttgttcttttgcttgtctggttatgtaaattatgtgcctacataagtggtggcggtggtgattgtacgt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36139038 |
tcttttccttgttcttttgcttgtctggttatgtaaattatgtgcctacataagtggtggcggtggtgattgtacgt |
36139114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 30819591 - 30819721
Alignment:
| Q |
28 |
gaggagaaggaaaagttaaatggaaacatcaaagaaataaagcagaaaaaatctgctgttcaagagaattataagaaaacacaagaggttcttttccttg |
127 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||||||| |||||||| || |||||||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
30819591 |
gaggagagggaaaagttaaaaggaaacttcaaagaaatagagcagaaagcatttgctgttcaaaagaattatgagaaaacagaagaggttcttttccttg |
30819690 |
T |
|
| Q |
128 |
ttcttttgcttgtctggttatgtaaattatg |
158 |
Q |
| |
|
||||||||||| | ||||||| |||| |||| |
|
|
| T |
30819691 |
ttcttttgcttttttggttatataaactatg |
30819721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University