View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16106_low_2 (Length: 620)
Name: NF16106_low_2
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Original strand, 51108729 - 51109305
Alignment:
| Q |
18 |
atgaaagagaaaacacagaaaaacatcatcaaccaacaccaccaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51108729 |
atgaaagagaaaacacagaaaaacatcatcaaccaacaccaccaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactga |
51108828 |
T |
|
| Q |
118 |
aggcacaaacacaaaatgcgcgacatgaataaaaccaagagacgcagattgtcacaataccaaaatcaccatggaacatattcccaatagcaaagatgac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51108829 |
aggcacaaacacaaaatgcgcgacatgaataaaaccaagagacgcagattgtcacaataccaaaatcaccatgcaacatattcccaatagcaaagatgac |
51108928 |
T |
|
| Q |
218 |
aattttgatagtgttgaaaagagattgtttctaaggaacattcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttg |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51108929 |
aattttgatagtgttg----------gtttctaaggaacattcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttg |
51109018 |
T |
|
| Q |
318 |
taaattacctgaacgggtgcagcataacacctcacgctgtttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51109019 |
taaattacctgaacgggtgcagcataacacctcacgctgtttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatg |
51109118 |
T |
|
| Q |
418 |
gcataacagtagggagagttttaggtttgggaatagaatttgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggt |
517 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51109119 |
gcataacagtagggagagttttaggttcgggaatagaatttgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggt |
51109218 |
T |
|
| Q |
518 |
attcagcctaaagtttccgattcgatgcagaaatgacataacctcaacggttgaattaaccgtaactgaggtttggtgtttgtttat |
604 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51109219 |
attcagcctaaagtttcagattcgatgcagaaatgacataacctcaacggttgaattaaccgtaactgaggtttggtgtttgtttat |
51109305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 51116634 - 51116719
Alignment:
| Q |
370 |
gagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggtttgggaatagaa |
455 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
51116634 |
gagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaa |
51116719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 590
Target Start/End: Original strand, 51103822 - 51103850
Alignment:
| Q |
562 |
caacggttgaattaaccgtaactgaggtt |
590 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51103822 |
caacggttgaattaaccgtaactgaggtt |
51103850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University