View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_low_5 (Length: 452)
Name: NF16106_low_5
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 102 - 442
Target Start/End: Complemental strand, 12086793 - 12086448
Alignment:
| Q |
102 |
ggtcttcaagatcaacatgtctatgaattcgagcataacccttgagggtctacaatactgtcacaataggctcaaatggcagtttctccataaactcctc |
201 |
Q |
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| T |
12086793 |
ggtcttcaagatcaacatgtccatgaatttgagcataacccttgagggtctacaatactgtcacaatgggctcaaatggcagtttctcaataaactcctc |
12086694 |
T |
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| Q |
202 |
agcttctatgaggtatccagattccccgagaacatccaaaagcctcatgtatttgtaagtatatttcttcacaagaaagtgactatttaatccatagttc |
301 |
Q |
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| T |
12086693 |
agcttctatgaggtatccagattccccgagaacatccaaaagccccatgtatttgtaagtatatttcttcacaagaaagtgactatttaatccatagttc |
12086594 |
T |
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| Q |
302 |
caggataaatgtgtgcat-----gtagacatgtataatacaaattcagatgcagaaacttataccaaaatcaaccaattatatgtttaagttaataaatt |
396 |
Q |
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| T |
12086593 |
caggataaatgtgtgcatgtgcagtagacatgtataatacaaattcagatgcagaaacttataccaaaatcaaccaattatatgtttaagttaataaatt |
12086494 |
T |
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| Q |
397 |
caattattaatgaacaacatatcatagtattctctttcagcctatg |
442 |
Q |
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| T |
12086493 |
caattattaatgaacaacatatcatagtattctctttcagcttatg |
12086448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 12087676 - 12087592
Alignment:
| Q |
18 |
acgacgagcatgtaatgatgtttccacttcctcgctacacctgctacaaaaaggagctccaagatgcataaaattcttctgatag |
102 |
Q |
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| T |
12087676 |
acgacgagcatgtaatgatgtttccacttcctcgctacacctgctacaaaaaggagctccaagatgcataaaattcttctgatag |
12087592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 245
Target Start/End: Original strand, 33779465 - 33779606
Alignment:
| Q |
104 |
tcttcaagatcaacatgtctatgaattcgagcataacccttgagggtctacaatactgtcacaataggctcaaatggcagtttctccataaactcctcag |
203 |
Q |
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| T |
33779465 |
tcttcaagatcaacatctccatgaattcgagcataattcttaagggtctcgaatactgtcacagtaggctcaaatggcagttgctcaataaactcctcag |
33779564 |
T |
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| Q |
204 |
cttctatgaggtatccagattccccgagaacatccaaaagcc |
245 |
Q |
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| T |
33779565 |
cttctttgaggtatccagattgaccgagaacatccaaaagcc |
33779606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 25301873 - 25301944
Alignment:
| Q |
251 |
tatttgtaagtatatttcttcacaagaaagtgact-atttaatccatagttccaggataaatgtgtgcatgt |
321 |
Q |
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| T |
25301873 |
tatttgcaagtatatttctccacatgaaaatgacttatttaatccatactttcaggataaatgtgtgcatgt |
25301944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 25302054 - 25302098
Alignment:
| Q |
394 |
attcaattattaatgaacaacatatcatagtattctctttcagcc |
438 |
Q |
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| T |
25302054 |
attcaattattaatgaacaacatatcacattattctctgtcagcc |
25302098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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