View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16106_low_8 (Length: 400)
Name: NF16106_low_8
Description: NF16106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16106_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 5169056 - 5169420
Alignment:
| Q |
18 |
atatgaagcacataacccatgtgtcaatctgctaagaaaataagagggttaaaattctgaattttaaaataggaactgttttatttgaaaaattctaaaa |
117 |
Q |
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| T |
5169056 |
atatgaagcacataacccatgtgtcaatctgctaagaaaataagagggttaaaattctgaattttaaaataggaactgttgtatttgaaaaattctaaaa |
5169155 |
T |
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| Q |
118 |
gttttctccgttatctacataatccctttccgatgacatcgatccattcatatttcccttaaatattctcactcttccagatgttaccgcacttcatatg |
217 |
Q |
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| T |
5169156 |
gttt--------atctacataatccctttccgatggcatcgatccattcatatttcccttaaatattctcgctcttccagatgttaccgcacttcatatg |
5169247 |
T |
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| Q |
218 |
ctatcactaatctctaatctccgacttccatattacaagtatagacataacttttactatctgttatgttctctttgaattccgaggtgtaatactttaa |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5169248 |
ctatcactaatctctaatctctgacttccatattacaagtatagacataacttttactatctgttatgttctctttgaattccgaggtgtaatactttaa |
5169347 |
T |
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| Q |
318 |
taatatatcatagatatctgcctccacttctattgcagaattctcgagggttgggtattcttaaaggtctctg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
5169348 |
taatatatcatagatatctgcctccacttctattgcagaattcttgagggttgggtaatcttaaaggtctctg |
5169420 |
T |
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