View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16107_low_1 (Length: 454)
Name: NF16107_low_1
Description: NF16107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16107_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 29848398 - 29847966
Alignment:
| Q |
1 |
agccatttgctcaattgtaaactgagagtattcagaaagagaatcaagcacagttttaatagtactctttggaggcacataaatatactcatcaacatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848398 |
agccatttgctcaattgtaaactgagagtattcagaaagagaatcaagcacagttttaatagtactctttggaggcacataaatatactcatcaacatca |
29848299 |
T |
|
| Q |
101 |
aaaaagaacatccacttagccataaacttatatctatgcaaacaatcattcaaaaccataaattgattatgataatatccatcaaatctctcttgatccc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848298 |
aaaaagaacatccatttagccataaacttatatctatgcaaacaatcattcaaaaccataaattgattatgataatatccatcaaatctctcttgatccc |
29848199 |
T |
|
| Q |
201 |
taatatcttgcaatgtaacataaccaagttcaatccaaggtttcaaaacctcaaacacttcctcatgaacaccaccagcatcatgtaacacaaaatgtga |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29848198 |
taatatcttgcaatgtaacataaccaagttcaatccaaggtttcaaaacctcaaacacttcctcatgaacaccaccagcatcatgtaacacaaaatgtga |
29848099 |
T |
|
| Q |
301 |
gtttggtccaaatagtctcacatgataagctatccattccctcactctttgaggattcaaattaccaaataaagatgatccacaatagaaatagtccaac |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
29848098 |
gtttggtccaaatagtctcacatgataagctatccattccctcactctttgaggattcaaattaccaaataaagatgatccacaatagaaatagtcaagc |
29847999 |
T |
|
| Q |
401 |
tttggctttgaatcatagagtgtaatatccaaa |
433 |
Q |
| |
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||||||||||||| | |||| |||||||||||| |
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|
| T |
29847998 |
tttggctttgaattaaagagggtaatatccaaa |
29847966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 14830491 - 14830892
Alignment:
| Q |
11 |
tcaattgtaaactgagagtattcagaaagagaatcaagcacagttttaatagtactctttggaggcacataaatatactcatcaacatcaaaaaagaaca |
110 |
Q |
| |
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||||| ||||||||| ||| || || | |||||||||||||| ||| |||||||| || ||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
14830491 |
tcaatggtaaactgattgtactcggataaagaatcaagcacagatttgatagtacttttaggaggaacatagatatactcatccacatcaaaaaagaaca |
14830590 |
T |
|
| Q |
111 |
tccacttagccataaacttatatctatgcaaacaatcattcaaaaccataaattgattatgataatatccatcaaatctctcttgatccctaatatcttg |
210 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||| || ||||||||||| |||||||| |
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| T |
14830591 |
tccacttagccataaacttatacctatgcaaacaatcattcacaaccataaactgattatgataatacccatcaaacctttcttgatcccttatatcttg |
14830690 |
T |
|
| Q |
211 |
caatgtaacataaccaagttcaatccaaggtttcaaaacctcaaacacttcctcatgaacaccaccagcatcatgtaacacaaaatgtgagtttggtcca |
310 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| ||| | || || ||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
14830691 |
caatgtaacatacccaagttcaatccatggtttcaaaacttcataaacctcttcatgaacaccaccagcatcatgtatcacaaaatgtgaacttggtcca |
14830790 |
T |
|
| Q |
311 |
aatagtctcacatgataagctatccattccctcactctttgaggattcaaattaccaaataaagatgatccacaatagaaatagtccaactttggctttg |
410 |
Q |
| |
|
|| | | ||||||| || || |||||||| | || | || |||||||| || ||| |||| ||||| || || |||||||| || ||||||| |||| |
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| T |
14830791 |
aagaatttcacatggtatgcgatccattcacgaacacgctgtggattcaagtttccatataaggatgaaccgcagtagaaataatcatactttggttttg |
14830890 |
T |
|
| Q |
411 |
aa |
412 |
Q |
| |
|
|| |
|
|
| T |
14830891 |
aa |
14830892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 36863475 - 36863334
Alignment:
| Q |
105 |
agaacatccacttagccataaacttatatctatgcaaacaatcattcaaaaccataaattgattatgataatatccat-caaatctctcttgatccctaa |
203 |
Q |
| |
|
|||||||| |||||| | ||||||||||||| ||||||||||||||||| | || |||||||||||||||| || | |||||||||||| ||||||| |
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| T |
36863475 |
agaacatctacttagtaagaaacttatatctacgcaaacaatcattcaaatctatgaattgattatgataatttcaaaacaaatctctcttcctccctaa |
36863376 |
T |
|
| Q |
204 |
tatcttgcaatgtaacataaccaagttcaatccaaggtttca |
245 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||| |||| |
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|
| T |
36863375 |
tatcttgcaatgtaacacaaccaagttctatccaaggcttca |
36863334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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