View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16107_low_2 (Length: 406)
Name: NF16107_low_2
Description: NF16107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16107_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 11684315 - 11684191
Alignment:
| Q |
24 |
gtagacatggaagtcgaaaacgccactgagtccaaagaaaagcgaacaagggaagaagaaggagaagaggaacccaaagacgacgtcgtttcgaagaagg |
123 |
Q |
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| T |
11684315 |
gtagacatggaagtcgaaaacgtcagtgagtccaaagaaaagcgaacaagggaagaagaaggagaagaggaacccaaagacgacgtcgtttcgaagaagg |
11684216 |
T |
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| Q |
124 |
ctaaagtagacgaggaaaaatcagt |
148 |
Q |
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| T |
11684215 |
ctaaagtagacgaggaaaaatcagt |
11684191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 11684128 - 11684017
Alignment:
| Q |
214 |
cttctggtgatgtgaaattgggactcaaaacgtttggttcttctttggatatgtttcattactttcacaagtttcttcatgcttggcctcagaatctcaa |
313 |
Q |
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| T |
11684128 |
cttctggtgatgtgaaattgggacccaaaacgtttggttcttctttggatatgtttcattactttcacaaatttcttcatgcttggcctcagaatctcaa |
11684029 |
T |
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| Q |
314 |
tgttaacaaggt |
325 |
Q |
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| T |
11684028 |
tgttaacaaggt |
11684017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 40320911 - 40321018
Alignment:
| Q |
216 |
tctggtgatgtgaaattgggactcaaaacgtttggttcttctttggatatgtttcattactttcacaagtttcttcatgcttggcctcagaatctcaatg |
315 |
Q |
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| T |
40320911 |
tctggtggtgtgaatttgggacccaaaacgtttggttcttctttggatatgttttattactttcacaaatttcttcatgcttggcttcagaatctcaatg |
40321010 |
T |
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| Q |
316 |
ttaacaag |
323 |
Q |
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| T |
40321011 |
ttaacaag |
40321018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 40320784 - 40320846
Alignment:
| Q |
86 |
agaagaggaacccaaagacgacgtcgtttcgaagaaggctaaagtagacgaggaaaaatcagt |
148 |
Q |
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| T |
40320784 |
agaagaggaacccaaagacgacatcgtttcgaagaaggctaaagtggacgatgaaaaatcagt |
40320846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 17869949 - 17869855
Alignment:
| Q |
229 |
aattgggactcaaaacgtttggttcttctttggatatgtttcattactttcacaagtttcttcatgcttggcctcagaatctcaatgttaacaag |
323 |
Q |
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| T |
17869949 |
aattgggacctaaaatgtttggttcttctttggatatgttttattactttcacaaatttcttcatgcttggcctcagaatctcaatgttaacaag |
17869855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 17870088 - 17870026
Alignment:
| Q |
86 |
agaagaggaacccaaagacgacgtcgtttcgaagaaggctaaagtagacgaggaaaaatcagt |
148 |
Q |
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| T |
17870088 |
agaagaggaacccaaagacgacatcgtttcgaagaaggctaaagtggacgatgaaaaatcagt |
17870026 |
T |
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