View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16107_low_4 (Length: 338)
Name: NF16107_low_4
Description: NF16107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16107_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 39641920 - 39641604
Alignment:
| Q |
15 |
cacaatgaaggtgccgggtttcagcatttggctttagcgtctgaagatatattcaagacattgagggaaatgagaaagagaagtggtgttggtggttttg |
114 |
Q |
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| T |
39641920 |
cacaatgaaggtgccgggtttcagcatttggctttagcgtctgaagatatattcaagacattgagggaaatgagaaagagaagtggtgttggtggttttg |
39641821 |
T |
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| Q |
115 |
agtttatgccttctcctccggtgacttattatcggaatttgaagaatcgcgttggcgatgttttgagtgatgaacagattaaggagtgtgaagagcttgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641820 |
agtttatgccttctcctccggtgacttattatcgtaatttgaagaatcgcgttggcgatgttttgagtgatgaacagattaaggagtgtgaagagcttgg |
39641721 |
T |
|
| Q |
215 |
gattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggtatat---------atatgctctatttgaatca |
305 |
Q |
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| T |
39641720 |
gattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggtatatatattatatatatgctctatttgaatca |
39641621 |
T |
|
| Q |
306 |
tttcatatcacacatat |
322 |
Q |
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|||||||||| |||||| |
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| T |
39641620 |
tttcatatcatacatat |
39641604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 39680329 - 39680625
Alignment:
| Q |
15 |
cacaatgaaggtgccgggtttcagcatttggctttagcgtctgaagatatattcaagacattgagggaaatgagaaagagaagtggtgttggtggttttg |
114 |
Q |
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|||||||||||||| ||||| ||||||||||| || ||| | |||||||| | |||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
39680329 |
cacaatgaaggtgctgggttacagcatttggcgttgatgtcagcggatatatttaggacactgagggaaatgagaaagagaagtggtgttggtgggtttg |
39680428 |
T |
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| Q |
115 |
agtttatgccttctcctccggtgacttattatcggaatttgaagaatcgcgttggcgatgttttgagtgatgaacagattaaggagtgtgaagagcttgg |
214 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680429 |
agtttatgccttctcctccagtgacttattatcgtaatttgaagaatcgcgttggcgatgttttgagtgatgaacagattaaggagtgtgaagagcttgg |
39680528 |
T |
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| Q |
215 |
gattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggtatatatatgctctatttgaatcatttcat |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||| || ||||||| |||| |
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| T |
39680529 |
gattctggttgatagagatgatcagggtactctgcttcagatttttaccaagcctattggtgataggtatgtatatgctcttttagaatcatatcat |
39680625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 60 - 306
Target Start/End: Complemental strand, 39637246 - 39637000
Alignment:
| Q |
60 |
gatatattcaagacattgagggaaatgagaaagagaagtggtgttggtggttttgagtttatgccttctcctccggtgacttattatcggaatttgaaga |
159 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| | |
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| T |
39637246 |
gatatattcaagacattgagagaaatgagaaagaaaagtggtgttggtggttttgagtttatgccttctcctcctgttacttattataggaatttgataa |
39637147 |
T |
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| Q |
160 |
atcgcgttggcgatgttttgagtgatgaacagattaaggagtgtgaagagc-ttgggattttggttgatagagatgatcagggtactctgcttcagattt |
258 |
Q |
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|||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39637146 |
atcgtgttggggatgttttgaatgatgaacagattaaggagtgtgaagagctttgggattttggttgatagagatgatcagggtactttgcttcagattt |
39637047 |
T |
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| Q |
259 |
ttactaagcccattggagataggtatatatatgctctatttgaatcat |
306 |
Q |
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|||||||||| ||||| ||||||||| || ||| ||| |||||||||| |
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| T |
39637046 |
ttactaagcctattggtgataggtatgta-atgatctttttgaatcat |
39637000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 7055782 - 7055513
Alignment:
| Q |
15 |
cacaatgaaggtgccgggtttcagcatttggctttagcgtctgaagatatattcaagacattgagggaaatgagaaagagaagtggtgttggtggttttg |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||||| |||| |||||||||||||||||||| |
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| T |
7055782 |
cacaatgaaggtgccgggtttcagcatttggctttggcgtctgaagatatattcaggacattaagagaaatgaggaagaaaagtggtgttggtggttttg |
7055683 |
T |
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| Q |
115 |
agtttatgccttctcctccggtgacttattatcggaatttgaagaatcgcgttggcgatgttttgagtgatgaacagattaaggagtgtgaagagcttgg |
214 |
Q |
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|||||||| || ||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7055682 |
agtttatggctcctcctccagtgacttattatcggaatttgaagaatcgtgtcgttgatgttttgagtgatgaacagattaaggagtgtgaagagcttgg |
7055583 |
T |
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| Q |
215 |
gattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggtat |
284 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||| |
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| T |
7055582 |
aattttggttgatagagatgatcagggtactattcttcagattttcactaagcctgttggagataggtat |
7055513 |
T |
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