View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16107_low_6 (Length: 303)
Name: NF16107_low_6
Description: NF16107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16107_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 43131796 - 43131671
Alignment:
| Q |
19 |
tataccccatacactgaaacactaatgacaaattttgacaaagtaaaaaacagccactcccatacacattgatttctacacttttcaaatttgactatta |
118 |
Q |
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| T |
43131796 |
tataccccatacactgaaacactaatgacaaattttgacaaagtaaaaaacaggcactcccatacacattgatttctacacttttcaaatttgactatta |
43131697 |
T |
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| Q |
119 |
ccaccccttttcccacttttcataaa |
144 |
Q |
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| T |
43131696 |
tcaccccttttcccacttttcataaa |
43131671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 43131608 - 43131498
Alignment:
| Q |
188 |
aatttatatatcattaattaaatttaa---agtat---atgattaccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaact |
281 |
Q |
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| T |
43131608 |
aatttatatatcattaattaaatttaaattagtatatgatgattaccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaact |
43131509 |
T |
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| Q |
282 |
tgcatgttctt |
292 |
Q |
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| T |
43131508 |
tgcatgttctt |
43131498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 7593252 - 7593315
Alignment:
| Q |
225 |
taccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgt |
288 |
Q |
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| T |
7593252 |
taccttggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcatgt |
7593315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 34288286 - 34288355
Alignment:
| Q |
223 |
attaccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttctt |
292 |
Q |
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| T |
34288286 |
attaccttggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttctt |
34288355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 39076132 - 39076064
Alignment:
| Q |
224 |
ttaccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttctt |
292 |
Q |
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| T |
39076132 |
ttaccttggcattctttgaactagtccttctccaaaatggttaaaggcaatggtaacttgcatattctt |
39076064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 50436794 - 50436850
Alignment:
| Q |
230 |
tggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcat |
286 |
Q |
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|||||||||||||||||| |||||||||||||||||||| || || || |||||||| |
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| T |
50436794 |
tggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttacttgcat |
50436850 |
T |
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