View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16107_low_7 (Length: 284)

Name: NF16107_low_7
Description: NF16107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16107_low_7
NF16107_low_7
[»] chr1 (3 HSPs)
chr1 (13-269)||(32139136-32139392)
chr1 (18-269)||(32148526-32148786)
chr1 (86-265)||(32127354-32127534)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 32139392 - 32139136
Alignment:
Q  13 aatataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactcaagccatggctaattccaattttcaacactt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32139392 aatataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactctagccatggctaattccaattttcaacactt 32139293  T
Q  113 cattacaatccttctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatggggcc 212  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32139292 cattacaatccttctcctatttttcttcatttcacccactttctctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaagatggggcc 32139193  T
Q  213 acaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaac 269  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32139192 acaacaaaccaatacaaagctcaaatcaaccagagaaccccattagtcccactgaac 32139136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 32148786 - 32148526
Alignment:
Q  18 aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactcaagccatggctaattccaattttcaac 108  Q
    ||||||||||||  |||||||||||||||||| ||||||||||| |||  ||         || ||||| |||||||||||||||| | |||||| ||||    
T  32148786 aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac 32148687  T
Q  109 acttcattacaatccttctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatgg 208  Q
    |||||||||||| ||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||     
T  32148686 acttcattacaaccctcctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccagtcacaaaagatgt 32148587  T
Q  209 ggccacaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaac 269  Q
     || || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  32148586 cgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagtcccactgaac 32148526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 32127534 - 32127354
Alignment:
Q  86 catggctaattccaattttcaacacttcattacaatccttctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagccctt 185  Q
    |||||||||| |||| || |||||||||||| |  | || ||  |||| |||||||||||||||||||||||||||||||| ||||| || ||||| |||    
T  32127534 catggctaataccaacttccaacacttcatttcccttctccttttattgttcttcattacaccaactttctctcaacaatcattcagacccaaagcactt 32127435  T
Q  186 gttct-cccagtcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccact 265  Q
    ||||| |||||||||||||||| | || ||||||  |||||||| ||||||||| ||||||||||||||| ||||||||||    
T  32127434 gttctccccagtcacaaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccactagtcccact 32127354  T

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