View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16108_high_2 (Length: 549)

Name: NF16108_high_2
Description: NF16108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16108_high_2
NF16108_high_2
[»] chr5 (2 HSPs)
chr5 (50-510)||(2339556-2340016)
chr5 (387-440)||(12576969-12577021)
[»] chr8 (5 HSPs)
chr8 (50-213)||(7749666-7749831)
chr8 (323-507)||(7749870-7750057)
chr8 (382-440)||(4011199-4011256)
chr8 (382-418)||(38178390-38178426)
chr8 (382-418)||(45512625-45512661)
[»] chr7 (1 HSPs)
chr7 (386-415)||(29229614-29229643)
[»] chr4 (4 HSPs)
chr4 (387-440)||(47147494-47147546)
chr4 (382-418)||(31339651-31339687)
chr4 (387-439)||(49987529-49987580)
chr4 (387-439)||(53540411-53540462)
[»] chr3 (1 HSPs)
chr3 (382-418)||(31261072-31261108)
[»] chr1 (1 HSPs)
chr1 (382-418)||(6025721-6025757)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 50 - 510
Target Start/End: Original strand, 2339556 - 2340016
Alignment:
Q  50 aaagtaaattcaagtattctatggcggtgatggaaggctttgactagcattttaataagacaatgttgtatgggacagtttgggttggggggtagaaagc 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2339556 aaagtaaattcaagtattctatggcggtgatggaaggctttgactagcattttaataagacaatgttgtatgggacagtttgggttgggaggtagaaagc 2339655  T
Q  150 caacacaagaataaactcaatgtagtatggatgagagtgttgcattggatgactgtaaatattagacgaggggagacgaaataggattggagaatgataa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2339656 caacacaagaataaactcaatgtagtatggatgagagtgttgcattggatgactgtaaatattagacgaggggagacgaaataggattggagaatgataa 2339755  T
Q  250 cattagagagagttggggagcaccnnnnnnnnnnnnagaaaaaatgattgaatctcaactttgttggtttagttatgtttggaggagattcataggttgt 349  Q
    ||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2339756 cattagagagagttggggagcaccttttttatttttagaaaaaatgattgaatctcaactttgttggtttagttatgtgtggaggagattcataggttgt 2339855  T
Q  350 atagtaggagaattgattatgaagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagatttatatttc 449  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2339856 atagtaggagaattgattatggagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagatttatatttc 2339955  T
Q  450 gatggtttagttattgacgtgattgatccatctagccactcacctaatgggataatgcgtg 510  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  2339956 aatggtttagttattgacgtgatcgatccatctagccactcacctaatgggatactgcgtg 2340016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 12577021 - 12576969
Alignment:
Q  387 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat 440  Q
    ||||||||||||||||||| |||||||||| | | | |||||||||||||||||    
T  12577021 ctagaggcagaggaagacctagaaaaactacaagat-aaactattaagaaagat 12576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 7749666 - 7749831
Alignment:
Q  50 aaagtaaattcaagtattctatggcggtgatggaaggcttt-gactagcattttaataagacaatgttgtatgggacagtttgggttggggggtagaaag 148  Q
    |||||||||||||||||||||| |  |||||| |||| ||| ||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||    
T  7749666 aaagtaaattcaagtattctattgttgtgatgaaaggtttttgactagcattttaatcagacagtgttgtatgggacggtttgggttgggaggtagaaag 7749765  T
Q  149 ccaacacaagaataaactcaatgtagta-tggatgagagtgttgcattggatgactgtaaatatta 213  Q
    ||| |||| |||||||||||| |||||| ||||||||| ||||||||||| ||| || ||||||||    
T  7749766 ccatcacatgaataaactcaacgtagtattggatgagaatgttgcattgggtgagtggaaatatta 7749831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 323 - 507
Target Start/End: Original strand, 7749870 - 7750057
Alignment:
Q  323 tatgtttggaggagattcataggttgtatagtaggagaattgatta--tgaagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactatagg 420  Q
    ||||| ||||||||| ||||||||| | |||||||||| |||||||  ||  | ||| ||||||||| ||||||||||||| |||||| |||||||||||    
T  7749870 tatgtgtggaggagactcataggttctgtagtaggagagttgattagatggtgggcaacctaatcgccagaggcagaggaataccaagcaaaactatagg 7749969  T
Q  421 ctaaaactattaagaaagatttatatttcgatggtttagttattgacgtgattgatccatctagc-cactcacctaatgggataatgc 507  Q
    | ||||||||||||||||||||| || ||  |||||||| ||| ||  |||||||||||| ||||  |||||||||||  ||||||||    
T  7749970 caaaaactattaagaaagatttagatgtcagtggtttagctatagatatgattgatccatatagctgactcacctaataagataatgc 7750057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 4011199 - 4011256
Alignment:
Q  382 aatcgctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat 440  Q
    ||||||||||| |||||||||||| |||||||||||| |   |||||||||||||||||    
T  4011199 aatcgctagagacagaggaagacctagaaaaactataag-agaaactattaagaaagat 4011256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 38178426 - 38178390
Alignment:
Q  382 aatcgctagaggcagaggaagaccaagaaaaactata 418  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  38178426 aatcgctagaggtagaggaagacctagaaaaactata 38178390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 45512661 - 45512625
Alignment:
Q  382 aatcgctagaggcagaggaagaccaagaaaaactata 418  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  45512661 aatcactagaggcagaggaagacctagaaaaactata 45512625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 29229643 - 29229614
Alignment:
Q  386 gctagaggcagaggaagaccaagaaaaact 415  Q
    ||||||||||||||||||||||||||||||    
T  29229643 gctagaggcagaggaagaccaagaaaaact 29229614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 47147494 - 47147546
Alignment:
Q  387 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat 440  Q
    ||||||||||||||||||| |||||||||||| |   |||||||||||||||||    
T  47147494 ctagaggcagaggaagacctagaaaaactata-gaagaaactattaagaaagat 47147546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 31339651 - 31339687
Alignment:
Q  382 aatcgctagaggcagaggaagaccaagaaaaactata 418  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  31339651 aatcactagaggcagaggaagacctagaaaaactata 31339687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 49987529 - 49987580
Alignment:
Q  387 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaaga 439  Q
    ||||||||||||||||||| |||||||||||| |   ||||||||||||||||    
T  49987529 ctagaggcagaggaagacctagaaaaactataag-agaaactattaagaaaga 49987580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 53540411 - 53540462
Alignment:
Q  387 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaaga 439  Q
    ||||||||||||||||||| |||||||||||| | | ||||||||| ||||||    
T  53540411 ctagaggcagaggaagacctagaaaaactataagat-aaactattaggaaaga 53540462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 31261108 - 31261072
Alignment:
Q  382 aatcgctagaggcagaggaagaccaagaaaaactata 418  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  31261108 aatcactagaggcagaggaagacctagaaaaactata 31261072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 6025721 - 6025757
Alignment:
Q  382 aatcgctagaggcagaggaagaccaagaaaaactata 418  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  6025721 aatcactagaggcagaggaagacctagaaaaactata 6025757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University