View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16108_high_4 (Length: 372)
Name: NF16108_high_4
Description: NF16108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16108_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 1455793 - 1456032
Alignment:
| Q |
12 |
catcatcatgtgaccataacaagtcctccacttgcgtaacatatttgtttgctgcttgctttatggatcttaggaacctcatctctgcaaccacaaatnn |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1455793 |
catcatcatgtgaccataacaagtcctccacttgcgtaacatatttgtttgctgcttgctttatggatcttaggaacctcatctctccaaccacaaataa |
1455892 |
T |
|
| Q |
112 |
nnnnntcaacaagggtttgtatattgcattgggaagacggtaacaatagggtttcgtttttgacaaaaacgatagggttttgttggtttggttgttcgac |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455893 |
aaaaatcaacaacggtttgtatattgcattgggaagacggtaacaatagggttttgtttttgacaaaaacgatagggttttgttggtttggttgttcgac |
1455992 |
T |
|
| Q |
212 |
aaaaatggaataaattaagtgtttagcatcggagaaaact |
251 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||||| |
|
|
| T |
1455993 |
aaaaatggaataaattaagggtttagtattggagaaaact |
1456032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University