View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16108_low_1 (Length: 666)
Name: NF16108_low_1
Description: NF16108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16108_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 15 - 664
Target Start/End: Complemental strand, 45317461 - 45316811
Alignment:
| Q |
15 |
acaaaagccagacatcataacacataaacgaggtttgagaaaaaacaatataaaagtcggaaacggttt-gttgatgtcggattttgtgtccgataaata |
113 |
Q |
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| T |
45317461 |
acaaaagccagacatcgtaagacataaacgaggtttgagaaaaaacaatataaaagtcggaaacggttttgttgatgtcggattttgtgtccaataaata |
45317362 |
T |
|
| Q |
114 |
tttctattagatagaagacattatgagtgaagtacttaaaaaacatcacatcattgattaatatatatttaacttaggaagtgactgcttggattacacc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317361 |
tttctattagatagaagacattatgagtgaagtacttaaaaaacatcacatcattgattaatatatatttaacttaggaagtgactgcttggattacacc |
45317262 |
T |
|
| Q |
214 |
tcaaggaagtgtccattttgtgttaattgtatccgtatgtaccattttctcagattatcatcttcagcaataacaatcatcccacgagcaacagctgttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317261 |
tcaaggaagtgtccattttgtgttaattgtatccgtatgtaccattttctcagattatcatcttcagcaataacaatcatcccacgagcaacagctgttt |
45317162 |
T |
|
| Q |
314 |
ctgaggtatttggcaaaatcaatcttttgcaagtgaatatccctgcagaataattatataagcttgtcaccaacatttccttttaactctcttgtgtcga |
413 |
Q |
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| T |
45317161 |
ctgaggtatttggcaaaatcaatcttttgcaagtgaatatccctgcagaataattatataagcttgtcaccaacatttccttttaactctcttgtgtcga |
45317062 |
T |
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| Q |
414 |
gaacaggatggaaaccaaggtgtggctgataccgtcccaacacctatagttataattgatcaagactctgatcctgatgcaactgtcgtcgagattacct |
513 |
Q |
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| T |
45317061 |
gaacaggatggaaaccaaggtgtggctgataccgtcccaacacctatagttataattgatcaagactctgatcctgatgcaactgtcgtcgagattacct |
45316962 |
T |
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| Q |
514 |
ttggtgatcgccttggtgctcttcttgacaccgtaagcatttctctcaataaatcaattgaatgcgtattcactgtccaatgtgtcagtttcagtctatg |
613 |
Q |
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| T |
45316961 |
ttggtgatcgccttggtgctcttcttgacaccgtaagcatttctctcaataaatcaattgaatgcgtattcactgtccaatgtgtcagtttcagtctatg |
45316862 |
T |
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| Q |
614 |
tcaatgtttcataatatatatcttatatttaaatgccattctgtatcttct |
664 |
Q |
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| T |
45316861 |
tcaatgtttcataatatatatcttatatttaaatgccattctgtatcttct |
45316811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 415 - 544
Target Start/End: Complemental strand, 970106 - 969977
Alignment:
| Q |
415 |
aacaggatggaaaccaaggtgtggctgataccgtcccaacacctatagttataattgatcaagactctgatcctgatgcaactgtcgtcgagattacctt |
514 |
Q |
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||||| ||||||| ||||| | | |||||||||| || || || ||||| |||||||| ||||||| ||||| ||||||||||| || ||||| || || |
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| T |
970106 |
aacagaatggaaatcaaggggagactgataccgttccgaccccaatagtcataattgaccaagacttggatccagatgcaactgtggtggagataacttt |
970007 |
T |
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| Q |
515 |
tggtgatcgccttggtgctcttcttgacac |
544 |
Q |
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| T |
970006 |
cggtgatcggcttggagctcttctcgacac |
969977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 544
Target Start/End: Complemental strand, 50724115 - 50724083
Alignment:
| Q |
512 |
ctttggtgatcgccttggtgctcttcttgacac |
544 |
Q |
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| T |
50724115 |
ctttggtgatcgccttggagctcttcttgacac |
50724083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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