View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16109_high_1 (Length: 397)
Name: NF16109_high_1
Description: NF16109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16109_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 41116814 - 41116445
Alignment:
| Q |
18 |
cttttgatatgaatttctcatgttttaagcagctctccaacaacagaagttttatgtcccttgtcgacaccaacatatcttccaaatttggaaaaattat |
117 |
Q |
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| T |
41116814 |
cttttgatatgaatttc-catgttttaagcagctctccaacaacagaagttttatgtcccgtgtcgacaccaacatatcttccaaatttggaaaaattat |
41116716 |
T |
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| Q |
118 |
tttactacatatcagttaattatattaccatgtcacatgtcccttcactcgtcaaagttgctgaaagaaatatcttactatttttgttgaaatgttattg |
217 |
Q |
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| T |
41116715 |
tttgctacatatcagttaattatattaccatgtcacatttcccttcactcgtcaaagttgctgaaagaaatatcttactatttttgttgaaatgttattg |
41116616 |
T |
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| Q |
218 |
tcgatcatggtttttcatcattaatttgaatgacaaatttatttgtattcactgcagaaagaaggagagtttgtattaaattattaattgatatctttga |
317 |
Q |
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| T |
41116615 |
tcgatcatggtttttcatcattaatttgaatgacaaatttatttgtattcactgcagaaagaaggggagtttgtattaaattattaattgatatctttga |
41116516 |
T |
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| Q |
318 |
gaggcccgttccatctttgttgaggggatacaatgctcctattcatcttgaatctgatctcactgatgatg |
388 |
Q |
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| T |
41116515 |
taggctcgttccatctttgttgaggggatacaatgctcctattcatcttgaatctgatctcactgatgatg |
41116445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 41102995 - 41102913
Alignment:
| Q |
306 |
tgatatctttgagaggcccgttccatctttgttgaggggatacaatgctcctattcatcttgaatctgatctcactgatgatg |
388 |
Q |
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| T |
41102995 |
tgatatctttgagaggcctgttccatctttgttaaggggatacagtgctcctattcgtcttgaatccgatctcactgatgatg |
41102913 |
T |
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