View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16109_low_1 (Length: 455)
Name: NF16109_low_1
Description: NF16109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16109_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 1674562 - 1674126
Alignment:
| Q |
1 |
ttcctctaaagaagaaaccctaaacaaaccatttttcatatcaatctcctccaaacaaacaccagcacaacacaaagccaacttctccaccacctcagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674562 |
ttcctctaaagaagaaaccctaaacaaaccatttttcatatcaatctcctccaaacaaacaccagcacaacacaaagccaacttctccaccacctcagga |
1674463 |
T |
|
| Q |
101 |
aactgagcagccaaactataccctacaaaccctccatagcttataccaaccaagctcaatctattcacaccatgagcctccatgagcttcttcaaacaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674462 |
aactgagcagccaaactataccctacaaaccctccatagcttataccaaccaagctcaatctattcacaccatgagcctccatgagcttcttcaaacaca |
1674363 |
T |
|
| Q |
201 |
aagcttgaaaagactctgtcctctctggccttgaagtgaatgatccaccaaagaagagaagatcaggcacatataaattgaactgtctgatgaaatgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674362 |
aagcttgaaaagactctgtcctctctggccttgaagtgaatgatccaccaaagaagagaagatcaggcacatataaattgaactgtctgatgaaatgatg |
1674263 |
T |
|
| Q |
301 |
aagatgttcaccatattgccacattgcattggcgccaaaaccatgaacaagaacaagagatggtttacatgggttgtgtaacttaggcacccaacaatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674262 |
aagatgttcaccatattgccacattgcattggcgccaaaaccatgaacaagaacaagagatggtttacatgggttgtgtaacttaggcacccaacaatgc |
1674163 |
T |
|
| Q |
401 |
atggtggttccgtcgccgagatcggtcacaacggacc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674162 |
atggtggttccgtcgccgagatcggtcacaacggacc |
1674126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University