View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16109_low_4 (Length: 284)

Name: NF16109_low_4
Description: NF16109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16109_low_4
NF16109_low_4
[»] chr5 (16 HSPs)
chr5 (8-267)||(30241119-30241384)
chr5 (8-220)||(29854414-29854629)
chr5 (8-204)||(29873277-29873473)
chr5 (8-103)||(30207625-30207723)
chr5 (161-267)||(30437069-30437178)
chr5 (8-96)||(30520537-30520628)
chr5 (8-96)||(30560877-30560968)
chr5 (8-115)||(30476478-30476588)
chr5 (8-115)||(30061475-30061585)
chr5 (8-115)||(30337418-30337528)
chr5 (8-115)||(30401177-30401287)
chr5 (25-115)||(30750766-30750859)
chr5 (221-267)||(30061706-30061752)
chr5 (161-224)||(30337309-30337375)
chr5 (161-220)||(30484657-30484719)
chr5 (8-115)||(30676181-30676291)
[»] chr7 (1 HSPs)
chr7 (161-264)||(26708588-26708694)
[»] chr3 (1 HSPs)
chr3 (27-127)||(25292828-25292931)
[»] chr4 (1 HSPs)
chr4 (74-135)||(52353131-52353191)
[»] chr1 (2 HSPs)
chr1 (8-108)||(7100524-7100627)
chr1 (8-108)||(7580619-7580722)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 30241384 - 30241119
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca---atcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||   || |||| |||||||||||||||||||||||| ||||    
T  30241384 gtgagaagaaactggataatcttctttttatcgtcttctcgtccaaacacttttggttcagtaataatagcgctggtttgacgccattcagctacgtcat 30241285  T
Q  105 ttgggctttcctgaacagttccagtaccctcctgtagnnnnnnnttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgtt 204  Q
    ||||||||||| |||||||||||||||| ||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241284 ttgggctttcccgaacagttccagtaccttcctgcagaaaaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgtt 30241185  T
Q  205 acc---ctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactc 267  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241184 accgatctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactc 30241119  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 29854414 - 29854629
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca---atcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||   | |||||| | |||||| |||||||||||||||||||||||||||   || || |||||||||||||||||||||||||||||||    
T  29854414 gtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttggttcagcaataatggagctggtttgacgccattcagctacttcat 29854513  T
Q  105 ttgggctttcctgaacagttccagtaccctcctgtagnnnnnnnttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgtt 204  Q
    ||| |||||||| |||| |   |||||||||| ||||       || ||| | ||||||||||||||||||||  |||   ||||||||| |||||||||    
T  29854514 ttgagctttccttaacaat---agtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgtt 29854610  T
Q  205 acc---ctcatggcgaaac 220  Q
     ||   |||||||||||||    
T  29854611 gccgatctcatggcgaaac 29854629  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 29873277 - 29873473
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttcaatcata---gagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||   | |||||| | |||||| |||||||||||||| |||||||||||||  |||   |||||||||||||||||||||||||||||||    
T  29873277 gtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaatacttttggttcaacaataatggagctggtttgacgccattcagctacttcat 29873376  T
Q  105 ttgggctttcctgaacagttccagtaccctcctgtagnnnnnnnttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgtt 204  Q
    ||| |||||||| |||| |   |||||||||| ||||       || ||| | |||||||||||||||||||| ||||   ||||||||| |||||||||    
T  29873377 ttgagctttccttaacaat---agtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgtt 29873473  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 30207625 - 30207723
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttca 103  Q
    ||||||||||||  ||||||||||| |||||| |||||||| ||||| ||||||||||   |||| |||||||| |||||||||||||| |||||||||    
T  30207625 gtgagaagaaactcgataatcttctctttatcatcttctcgcccaaatacttttggttcagcaataatagagctagtttgacgccattctgctacttca 30207723  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 30437069 - 30437178
Alignment:
Q  161 tcagcaatatcatccaacctcccgttaatctcttccaacctgttacc---ctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttga 257  Q
    |||||||||  ||||||||||||  ||||||||| ||||||||||||   || |||||||||||| | ||| || |||  ||||||||||||||||||||    
T  30437069 tcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagatgtgaattttctcagtcgactagacttga 30437168  T
Q  258 tcgagcactc 267  Q
    |||| |||||    
T  30437169 tcgaacactc 30437178  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 30520628 - 30520537
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagc 96  Q
    ||||||||||||  || |||||||| |||||| |||||||| ||| | ||||||||||   |||| |||||||| |||||||||||||||||    
T  30520628 gtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagc 30520537  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 30560968 - 30560877
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagc 96  Q
    ||||||||||||  || |||||||| |||||| |||||||| ||| | ||||||||||   |||| |||||||| |||||||||||||||||    
T  30560968 gtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagc 30560877  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 30476478 - 30476588
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttca---atcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||  || |||| ||| | |||| ||| |||||||||||||||| ||||||   || || ||||| ||||| ||||||||||| |||||||    
T  30476478 gtgagaagaaactcgacaatcctctctctatcatctactcgtccaaacactttgggttcagcaataatggagcttgtttggcgccattcagcaacttcat 30476577  T
Q  105 ttgggctttcc 115  Q
    |||| ||||||    
T  30476578 ttggcctttcc 30476588  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 30061475 - 30061585
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||   | |||||| | ||||||  ||||||||||||||||||||||||   |||| || |||| |||||| |||| ||||||||||| ||    
T  30061475 gtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 30061574  T
Q  105 ttgggctttcc 115  Q
     |||| |||||    
T  30061575 ctgggatttcc 30061585  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 30337528 - 30337418
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||   | |||||| | ||||||  ||||||||||||||||||||||||   |||| || |||| |||||| |||| ||||||||||| ||    
T  30337528 gtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 30337429  T
Q  105 ttgggctttcc 115  Q
     |||| |||||    
T  30337428 ctgggatttcc 30337418  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 30401177 - 30401287
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||   | |||||| | |||||| |||| |||||||||||||| |||||   |||| || ||| || |||||||||||||| |||||||||    
T  30401177 gtgagaagaaactcaaaaatcttttctttatcatcttttcgtccaaacacttctggtttagcaataatggagttgatttgacgccattcatctacttcat 30401276  T
Q  105 ttgggctttcc 115  Q
     || |||||||    
T  30401277 ctgagctttcc 30401287  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 30750766 - 30750859
Alignment:
Q  25 aatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttcatttgggctttcc 115  Q
    |||||| | ||||||  ||||||||||||||||||||||||   |||| || |||| |||||| |||| ||||||||||| || |||| |||||    
T  30750766 aatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctgggatttcc 30750859  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 30061706 - 30061752
Alignment:
Q  221 ttgagagaggttaatcctctcagtcgactagacttgatcgagcactc 267  Q
    |||| |||||| |||||||||||||||| ||||||||||||| ||||    
T  30061706 ttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactc 30061752  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 30337375 - 30337309
Alignment:
Q  161 tcagcaatatcatccaacctcccgttaatctcttccaacctgttacc---ctcatggcgaaacttga 224  Q
    |||||||||| ||| |||||||   ||||||||| ||||||||||||   |||||||||||||||||    
T  30337375 tcagcaatattatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttga 30337309  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 30484657 - 30484719
Alignment:
Q  161 tcagcaatatcatccaacctcccgttaatctcttccaacctgttacc---ctcatggcgaaac 220  Q
    |||||||||||||| |||||||   ||||||||| ||||||||||||   |||||||||||||    
T  30484657 tcagcaatatcatctaacctccttgtaatctctttcaacctgttaccaatctcatggcgaaac 30484719  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 30676291 - 30676181
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||  || |||||| | || |||  ||||||||||||||||||||| ||   |||| || |||| |||||| |||| ||||||||||| ||    
T  30676291 gtgagaagaaactcgacaatcttttcttgatcaacttctcgtccaaacacttttgattcagcaataattgagccggtttggcgcccttcagctacttgat 30676192  T
Q  105 ttgggctttcc 115  Q
     |||| |||||    
T  30676191 ctgggatttcc 30676181  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 26708588 - 26708694
Alignment:
Q  161 tcagcaatatcatccaacctcccgttaatctcttccaacctgttacc---ctcatggcgaaacttgagagaggttaatcctctcagtcgactagacttga 257  Q
    |||||||||  ||||||||||||  ||||||||| ||||||||||||   || |||||||||||| | |||||| |||  | ||||||||||||||||||    
T  26708588 tcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagaggtgaattttttcagtcgactagacttga 26708687  T
Q  258 tcgagca 264  Q
    |||||||    
T  26708688 tcgagca 26708694  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 25292931 - 25292828
Alignment:
Q  27 tcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttcatttgggctttcctgaacagt 123  Q
    |||||| |||||| |||||||||||||| ||||||||||   |||| ||||| || ||||| ||| |||||||||||||| ||| |||||||  ||||||    
T  25292931 tcttctctttatcatcttctcgtccaaatacttttggttcggcaataatagaactagtttggcgctattcagctacttcagttgagctttccctaacagt 25292832  T
Q  124 tcca 127  Q
    ||||    
T  25292831 tcca 25292828  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 52353131 - 52353191
Alignment:
Q  74 gagctggtttgacgccattcagctacttcatttgggctttcctgaacagttccagtaccctc 135  Q
    ||||||||||| ||||||||||||| |||| ||| |||||||| ||||||||||||||||||    
T  52353131 gagctggtttggcgccattcagctatttcagttgagctttcct-aacagttccagtaccctc 52353191  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 7100524 - 7100627
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggttcaatcata---gagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||   | |||||||| |||||| ||||||||||||||||  |||||||||   |||   ||||||||||| ||||||||||| ||||||     
T  7100524 gtgagaagaaactcaacaatcttctctttatcatcttctcgtccaaacatctttggttcagcaataaaggagctggtttggcgccattcagccacttcag 7100623  T
Q  105 ttgg 108  Q
    ||||    
T  7100624 ttgg 7100627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 7580722 - 7580619
Alignment:
Q  8 gtgagaagaaacctgataatcttctttttatcgtcttctcgtccaaacacttttggtt---caatcatagagctggtttgacgccattcagctacttcat 104  Q
    ||||||||||||   | |||| ||| |||||| ||||||||||||||||| |||||||   |||| || ||||||||||| ||||| ||||| ||||||     
T  7580722 gtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacacctttggttcggcaataatggagctggtttggcgccagtcagccacttcaa 7580623  T
Q  105 ttgg 108  Q
    ||||    
T  7580622 ttgg 7580619  T

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