View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16109_low_6 (Length: 268)
Name: NF16109_low_6
Description: NF16109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16109_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 5465349 - 5465115
Alignment:
| Q |
18 |
atgtcatgcatcaccaccaccaatgatctgaatgtatgaaagtgtggattgaaaataacaacataagtttcttttggtttttggattgaaaaataacaac |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5465349 |
atgtcatgcatcacc---accaatgatctgaatgtatgaaagtgtggattgaaaataacaacataagtttcttttggtttttggattgaaaaataacaac |
5465253 |
T |
|
| Q |
118 |
aataagccttgttacaacattttaagtcagtacttggagtcttcaattttactttgttttgggtttacctaatagctaatttcaagaagcattgtgtgtc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5465252 |
aataagccttgttacaacattttaagtcagtactttgagtcttcaattttactttgttttgggtttacctaatagctaatttcaagaagcattgtgtgtc |
5465153 |
T |
|
| Q |
218 |
atcattttacactttaagtttgttagaagttttgatga |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5465152 |
atcattttacactttaagtttgttagaagttttgatga |
5465115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University