View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1610R-Insertion-10 (Length: 471)

Name: NF1610R-Insertion-10
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1610R-Insertion-10
NF1610R-Insertion-10
[»] chr1 (11 HSPs)
chr1 (47-471)||(24352580-24353004)
chr1 (44-471)||(24340212-24340639)
chr1 (237-456)||(24367144-24367375)
chr1 (309-464)||(24322835-24322990)
chr1 (304-363)||(24415839-24415898)
chr1 (94-282)||(24310022-24310213)
chr1 (236-299)||(24369476-24369539)
chr1 (304-437)||(24310265-24310398)
chr1 (298-435)||(24369568-24369704)
chr1 (60-140)||(24322273-24322353)
chr1 (100-146)||(24365193-24365239)
[»] scaffold0508 (1 HSPs)
scaffold0508 (8-169)||(12069-12230)
[»] chr4 (31 HSPs)
chr4 (300-439)||(49041016-49041155)
chr4 (87-148)||(45366400-45366461)
chr4 (94-148)||(45372251-45372305)
chr4 (237-284)||(48147754-48147801)
chr4 (237-284)||(48735419-48735466)
chr4 (237-286)||(45372107-45372156)
chr4 (87-140)||(48870374-48870427)
chr4 (87-140)||(48886060-48886113)
chr4 (233-290)||(48902925-48902982)
chr4 (237-286)||(49041199-49041248)
chr4 (240-284)||(7908325-7908369)
chr4 (238-281)||(7237763-7237806)
chr4 (238-281)||(7771396-7771439)
chr4 (238-281)||(7790081-7790124)
chr4 (237-284)||(45384905-45384952)
chr4 (237-284)||(50250818-50250865)
chr4 (238-284)||(7877727-7877773)
chr4 (238-284)||(48705396-48705442)
chr4 (98-148)||(49044378-49044428)
chr4 (107-148)||(37827176-37827217)
chr4 (237-286)||(48170597-48170646)
chr4 (237-282)||(48852663-48852708)
chr4 (237-282)||(48870539-48870584)
chr4 (237-282)||(48875843-48875888)
chr4 (237-282)||(48886225-48886270)
chr4 (237-282)||(48898701-48898746)
chr4 (95-148)||(48902778-48902831)
chr4 (70-146)||(7771222-7771298)
chr4 (70-146)||(7789907-7789983)
chr4 (171-215)||(45366327-45366371)
chr4 (237-281)||(49048613-49048657)
[»] chr5 (5 HSPs)
chr5 (237-284)||(29696203-29696250)
chr5 (237-289)||(179031-179083)
chr5 (307-342)||(29712421-29712456)
chr5 (237-283)||(29712504-29712550)
chr5 (94-148)||(42562513-42562567)
[»] chr3 (5 HSPs)
chr3 (237-286)||(11005988-11006037)
chr3 (237-286)||(11024563-11024612)
chr3 (233-282)||(47451946-47451995)
chr3 (106-145)||(47452092-47452131)
chr3 (237-286)||(11015551-11015600)
[»] chr8 (3 HSPs)
chr8 (237-284)||(4031938-4031985)
chr8 (237-282)||(12200304-12200349)
chr8 (237-282)||(12444732-12444777)
[»] chr6 (1 HSPs)
chr6 (237-281)||(21979678-21979722)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 47 - 471
Target Start/End: Original strand, 24352580 - 24353004
Alignment:
Q  47 tgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 146  Q
    ||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| |||||||||||||||||||  | |     
T  24352580 tgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatatgtt 24352679  T
Q  147 caaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggttttg 246  Q
    || | | ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  24352680 cacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggttttg 24352779  T
Q  247 ggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttatttggggattttctcattgagagctaatgcgtggaacgaaattgtgag 346  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24352780 ggtatgacgaatcaacatatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgag 24352879  T
Q  347 ccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcagttat 446  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24352880 ccctacccatttgcctttttgtagtaagtcctctccctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcaattat 24352979  T
Q  447 gatacacgtgactatcttgttgttg 471  Q
    ||||||| ||| |||||||||||||    
T  24352980 gatacacatgaatatcttgttgttg 24353004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 44 - 471
Target Start/End: Original strand, 24340212 - 24340639
Alignment:
Q  44 cgatgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataatt 143  Q
    |||||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| |||||||||||||||||||  |    
T  24340212 cgatgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatat 24340311  T
Q  144 ttgcaaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggtt 243  Q
     | || | | ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| ||||||||||||    
T  24340312 gttcacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggtt 24340411  T
Q  244 ttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttatttggggattttctcattgagagctaatgcgtggaacgaaattgt 343  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24340412 ttgggtatgacgaatcaacatatgattacttggtggtttcagtttaatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgt 24340511  T
Q  344 gagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcagt 443  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24340512 gagccctacccatttgcctttttgtagtaagtcctctccctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcaat 24340611  T
Q  444 tatgatacacgtgactatcttgttgttg 471  Q
    |||||||||| ||| |||||||||||||    
T  24340612 tatgatacacatgaatatcttgttgttg 24340639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 237 - 456
Target Start/End: Original strand, 24367144 - 24367375
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttatttggggattttctcattgagagctaatgcgtggaacg 336  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  | || |||| ||| ||||||||||||||||||||||||||||||||||| |    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctatgattacttggggattttctcattgagagctaatgcgtggaatg 24367243  T
Q  337 aaattgtgagccctacccatttgcctttttgtagtaag------------tcctcttcctttgtttatcccttagtagagtcggtcttcaacggagctat 424  Q
    ||| |||| |  ||||||||||| ||||||||||| ||            ||||||||| ||||||||||| |||||||| |  ||||  | || |||||    
T  24367244 aaactgtgggtactacccatttggctttttgtagtgaggtttctccctcttcctcttccattgtttatcccgtagtagagacactctttcatggggctat 24367343  T
Q  425 tcactggttggctttcagttatgatacacgtg 456  Q
    |||||||||| ||||  ||||||||| |||||    
T  24367344 tcactggttgacttttcgttatgatatacgtg 24367375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 464
Target Start/End: Original strand, 24322835 - 24322990
Alignment:
Q  309 ttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcc-tttttgtagtaagtcctcttcctttgtttatcccttagtagagtcg 407  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||| |  ||| ||||   |||| |  | |||||||||    
T  24322835 ttctctttgagagctaatgcgtggaacgaaattgtgggtcctacacatttgccttttttgtagtaact-ttctcccttcacttattctgtggtagagtcg 24322933  T
Q  408 gtcttcaacggagctattcactggttggctttcagttatgatacacgtgactatctt 464  Q
    ||||||||||| |||||||||||||||||||| |||  |||| ||| ||| ||||||    
T  24322934 gtcttcaacggggctattcactggttggctttaagtcctgatgcacatgagtatctt 24322990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 24415839 - 24415898
Alignment:
Q  304 ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctt 363  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24415839 ggattttctcattgagagctaatgtgtggaacgaaattgtgagtcctacccatttgcctt 24415898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 282
Target Start/End: Original strand, 24310022 - 24310213
Alignment:
Q  94 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttcaaaagcttatatatggaatccatccaccggatttta 193  Q
    ||||| ||||||||||| || ||| ||||||||||||||| |||||| | ||| |   |  ||||||   |||  |||||||||||||||||||| || |    
T  24310022 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 24310121  T
Q  194 tagaaaaatacctttccctcct---agtgtttcacatttagttttttatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    |||| |||||||||  ||||||   | |  ||||| ||||  ||| ||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  24310122 tagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttt 24310213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 24369476 - 24369539
Alignment:
Q  236 ttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttat 299  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||| || |||| ||||    
T  24369476 ttatggttttggctatgacgagtcaacagatgattacctggtggtttcagtatcctatgattat 24369539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 437
Target Start/End: Original strand, 24310265 - 24310398
Alignment:
Q  304 ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttagtaga 403  Q
    ||||||| ||| |||||||||||| ||| |||||||||||||| ||| | ||||| ||||||| |||| ||   ||| | |||| |||| |  | |||||    
T  24310265 ggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagtgagctttctccttttgcttattctgtggtaga 24310364  T
Q  404 gtcggtcttcaacggagctattcactggttggct 437  Q
    ||| |||||||| || ||||||||||||||||||    
T  24310365 gtccgtcttcaatggggctattcactggttggct 24310398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 435
Target Start/End: Original strand, 24369568 - 24369704
Alignment:
Q  298 atttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatccctt 397  Q
    |||||| |||||| |||||| ||||||||| |||||| |||||||||    |||||| ||||||||||| | ||  |  ||||||||||| || |||| |    
T  24369568 atttggcgatttt-tcattgtgagctaatgtgtggaaggaaattgtggatactacccgtttgcctttttatggtcgggtctcttcctttgattgtcccgt 24369666  T
Q  398 agtagagtcggtcttcaacggagctattcactggttgg 435  Q
    |||||| ||| | ||||| || ||||||||||||||||    
T  24369667 agtagaatcgcttttcaatggggctattcactggttgg 24369704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 24322273 - 24322353
Alignment:
Q  60 cctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 140  Q
    ||||||| |||| |||||| ||||   |||||  ||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  24322273 cctgttctactggaccctaattttttgcttcctaaatcttattttgatcttaaagttagaggttcatgtagagggtatata 24322353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 24365193 - 24365239
Alignment:
Q  100 attttgatcttcaaattaaaggttcatgtagagggtttataattttg 146  Q
    ||||||||||| |||||| |||||||||||||||||| ||| |||||    
T  24365193 attttgatcttaaaattataggttcatgtagagggttcatatttttg 24365239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 12069 - 12230
Alignment:
Q  8 atttcgatctatagatttaccgtcattgtttacccacgatgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgat 107  Q
    |||||||||||||||||||| |||||||||||   ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  12069 atttcgatctatagatttactgtcattgtttagggacgatgattattatgaacctgttccgctgaaccctagttttccacttccggaatctcattttgat 12168  T
Q  108 cttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttcaaaagcttatat 169  Q
    |||||||||||||||||||||||| |||||||| ||||||| | | ||||||| ||||||||    
T  12169 cttcaaattaaaggttcatgtagaaggtttatatttttgcacacttgttcaaaggcttatat 12230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 49041155 - 49041016
Alignment:
Q  300 ttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttag 399  Q
    |||| |||||||||||||| |||||||| |||||| ||||||||| |  ||| ||||| ||||||||||||||||  |  ||||| |  ||||||| | |    
T  49041155 ttggagattttctcattgaaagctaatgtgtggaaggaaattgtgggtactatccattggcctttttgtagtaaggtcgtttcctcttattatcccatgg 49041056  T
Q  400 tagagtcggtcttcaacggagctattcactggttggcttt 439  Q
    |||| ||| |||||||||| |||||||| |||||||||||    
T  49041055 tagactcgttcttcaacggggctattcattggttggcttt 49041016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 45366461 - 45366400
Alignment:
Q  87 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 148  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  45366461 cttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 45366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 45372305 - 45372251
Alignment:
Q  94 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 148  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  45372305 aatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 48147801 - 48147754
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttca 48147754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 48735466 - 48735419
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggtttca 48735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 45372156 - 45372107
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 286  Q
    ||||| ||||||||||| |||| || ||||||||||||||||||||||||    
T  45372156 tatggatttgggtatgatgagttaagagatgattacttggtggtttcagt 45372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 48870374 - 48870427
Alignment:
Q  87 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 140  Q
    ||||| |||||||||| |||| || |||||||||||||||||||||| ||||||    
T  48870374 cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata 48870427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 48886060 - 48886113
Alignment:
Q  87 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 140  Q
    ||||| |||||||||| |||| || |||||||||||||||||||||| ||||||    
T  48886060 cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata 48886113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 48902925 - 48902982
Alignment:
Q  233 tttttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttca 290  Q
    |||||||||||||||||||||| | |||| ||||||||||||| |||| ||| |||||    
T  48902925 tttttatggttttgggtatgaccactcaagagatgattacttgatggtatcaatttca 48902982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 49041248 - 49041199
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 286  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagt 49041199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 7908325 - 7908369
Alignment:
Q  240 ggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttca 7908369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q  238 atggttttgggtatgacgagtcaacagatgattacttggtggtt 281  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggtt 7237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  238 atggttttgggtatgacgagtcaacagatgattacttggtggtt 281  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  238 atggttttgggtatgacgagtcaacagatgattacttggtggtt 281  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 45384952 - 45384905
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtttca 45384905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 50250865 - 50250818
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttca 50250818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 7877727 - 7877773
Alignment:
Q  238 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttca 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 48705442 - 48705396
Alignment:
Q  238 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||||| |||||  |||||||||||||||||||||| ||||||    
T  48705442 atggttttggatatgatcagtcaacagatgattacttggttgtttca 48705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 49044428 - 49044378
Alignment:
Q  98 ttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 148  Q
    ||||||| || |||||| |||| |||||||||||||||||||| |||||||    
T  49044428 ttatttttatattcaaactaaatgttcatgtagagggtttatatttttgca 49044378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 37827217 - 37827176
Alignment:
Q  107 tcttcaaattaaaggttcatgtagagggtttataattttgca 148  Q
    ||||||||||||||||||| ||||||||||| || |||||||    
T  37827217 tcttcaaattaaaggttcaggtagagggtttgtatttttgca 37827176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 48170646 - 48170597
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 286  Q
    |||||||||||||||||  ||| || |||||||||||| |||||||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggtttcagt 48170597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 48852663 - 48852708
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttt 48852708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 48870539 - 48870584
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48870539 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48870584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 48875843 - 48875888
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    |||||||||||||||||  ||| | |||||||||||||||||||||    
T  48875843 tatggttttgggtatgatcagttagcagatgattacttggtggttt 48875888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 48886225 - 48886270
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48886225 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48886270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 48898701 - 48898746
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48898746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 48902778 - 48902831
Alignment:
Q  95 atcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 148  Q
    |||||||||||||||  |||||| ||||||||| ||||||||| || |||||||    
T  48902778 atcttattttgatctaaaaattataggttcatgcagagggtttgtacttttgca 48902831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 7771222 - 7771298
Alignment:
Q  70 tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 146  Q
    |||||| || |||| | ||||| ||||||||||||  | || |||||| |||||| ||||||||||||||| |||||    
T  7771222 tgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 7789907 - 7789983
Alignment:
Q  70 tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 146  Q
    |||||| || |||| | ||||| ||||||||||||  | || |||||| |||||| ||||||||||||||| |||||    
T  7789907 tgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcgtgtagagggtttatacttttg 7789983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 45366371 - 45366327
Alignment:
Q  171 tggaatccatccaccggattttatagaaaaatacctttccctcct 215  Q
    |||||||||||||| |||||| ||| |||||||||||| ||||||    
T  45366371 tggaatccatccactggatttcataaaaaaatacctttgcctcct 45366327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 49048657 - 49048613
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 281  Q
    ||||||||||||||||||   |||||||||||||| |||||||||    
T  49048657 tatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 29696203 - 29696250
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttca 29696250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 179031 - 179083
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttc 289  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||    
T  179031 tatggttttgggtatgaggagtcaacagatgattacttgttggtgtcaatttc 179083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 29712456 - 29712421
Alignment:
Q  307 ttttctcattgagagctaatgcgtggaacgaaattg 342  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29712456 ttttctcattgagagctgatgcgtggaacgaaattg 29712421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 29712550 - 29712504
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttc 283  Q
    |||||||||||||||||||||||||  ||||||||||| ||| ||||    
T  29712550 tatggttttgggtatgacgagtcaagggatgattacttcgtgctttc 29712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 42562567 - 42562513
Alignment:
Q  94 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 148  Q
    |||||||||| ||| ||  |||||||||||| ||||||||||||||| |||||||    
T  42562567 aatcttatttcgatattggaattaaaggttcgtgtagagggtttatacttttgca 42562513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 11006037 - 11005988
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 286  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11005988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 11024612 - 11024563
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 286  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 47451995 - 47451946
Alignment:
Q  233 tttttatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    ||||||| | |||||||||||||||| ||||||||||||||| |||||||    
T  47451995 tttttattggtttgggtatgacgagttaacagatgattacttagtggttt 47451946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 47452131 - 47452092
Alignment:
Q  106 atcttcaaattaaaggttcatgtagagggtttataatttt 145  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  47452131 atcttgaaattaaaggttcatgtagagggtttatactttt 47452092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 11015600 - 11015551
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 286  Q
    |||||||||||||||||| | | || |||||||||||||||||| |||||    
T  11015600 tatggttttgggtatgaccatttaagagatgattacttggtggtatcagt 11015551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 4031985 - 4031938
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 284  Q
    |||||||||||||||||| |||||||| |||| ||| |||||||||||    
T  4031985 tatggttttgggtatgaccagtcaacaaatgactacctggtggtttca 4031938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 12200304 - 12200349
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12200349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 12444732 - 12444777
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 282  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12444777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 21979722 - 21979678
Alignment:
Q  237 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 281  Q
    ||||||||||| |||||| |||||| | |||||||||||||||||    
T  21979722 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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