View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1610R-Insertion-11 (Length: 631)

Name: NF1610R-Insertion-11
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1610R-Insertion-11
NF1610R-Insertion-11
[»] chr7 (33 HSPs)
chr7 (337-618)||(46201128-46201413)
chr7 (339-451)||(46202289-46202401)
chr7 (339-445)||(35105-35211)
chr7 (339-451)||(25533186-25533298)
chr7 (338-450)||(38539668-38539780)
chr7 (338-445)||(27751-27858)
chr7 (492-629)||(669212-669349)
chr7 (498-628)||(5095228-5095358)
chr7 (498-628)||(24051365-24051495)
chr7 (476-593)||(40811461-40811578)
chr7 (524-628)||(39752336-39752440)
chr7 (476-551)||(43441486-43441561)
chr7 (492-594)||(44372885-44372987)
chr7 (492-594)||(44381741-44381843)
chr7 (339-406)||(32254987-32255054)
chr7 (358-405)||(35664333-35664380)
chr7 (337-451)||(9662242-9662356)
chr7 (398-451)||(9660730-9660783)
chr7 (478-546)||(35295841-35295909)
chr7 (538-593)||(45454211-45454266)
chr7 (476-530)||(32255131-32255185)
chr7 (479-552)||(22537703-22537776)
chr7 (476-549)||(43460725-43460798)
chr7 (355-406)||(45455423-45455474)
chr7 (354-396)||(10942313-10942355)
chr7 (354-420)||(30333298-30333364)
chr7 (355-405)||(32256447-32256497)
chr7 (543-593)||(41078931-41078981)
chr7 (355-420)||(6173487-6173552)
chr7 (357-406)||(30311520-30311569)
chr7 (498-559)||(48312202-48312262)
chr7 (484-560)||(2414893-2414969)
chr7 (339-387)||(9660119-9660167)
[»] chr4 (46 HSPs)
chr4 (336-618)||(28590738-28591026)
chr4 (476-629)||(49896408-49896560)
chr4 (339-551)||(40723225-40723442)
chr4 (338-451)||(38698034-38698147)
chr4 (492-600)||(7053333-7053441)
chr4 (342-450)||(28589782-28589890)
chr4 (338-453)||(38695540-38695655)
chr4 (484-593)||(15449933-15450042)
chr4 (339-598)||(53432060-53432325)
chr4 (498-628)||(23317125-23317255)
chr4 (498-628)||(25922201-25922331)
chr4 (338-451)||(40724850-40724961)
chr4 (476-605)||(52240018-52240148)
chr4 (528-628)||(50997281-50997381)
chr4 (340-451)||(34326729-34326839)
chr4 (498-628)||(22161578-22161708)
chr4 (344-417)||(53435793-53435866)
chr4 (349-420)||(669682-669753)
chr4 (476-594)||(44498601-44498719)
chr4 (476-604)||(56085487-56085614)
chr4 (476-551)||(26629931-26630005)
chr4 (538-593)||(42872188-42872243)
chr4 (337-451)||(13533266-13533380)
chr4 (398-451)||(13531754-13531807)
chr4 (337-406)||(54485596-54485665)
chr4 (476-552)||(2312380-2312456)
chr4 (476-560)||(13165635-13165718)
chr4 (354-420)||(390230-390296)
chr4 (354-420)||(2162622-2162688)
chr4 (342-415)||(14524892-14524966)
chr4 (476-557)||(27850831-27850913)
chr4 (339-420)||(668384-668465)
chr4 (355-420)||(27850969-27851034)
chr4 (492-560)||(36845566-36845633)
chr4 (337-420)||(7053176-7053259)
chr4 (484-595)||(7707738-7707848)
chr4 (500-551)||(19750195-19750246)
chr4 (500-551)||(19789560-19789611)
chr4 (355-406)||(52239891-52239942)
chr4 (475-545)||(1794552-1794622)
chr4 (524-629)||(38555101-38555207)
chr4 (356-405)||(393690-393739)
chr4 (357-406)||(42810254-42810303)
chr4 (354-406)||(1190243-1190295)
chr4 (354-406)||(3921182-3921234)
chr4 (339-387)||(13531143-13531191)
[»] chr8 (39 HSPs)
chr8 (216-338)||(39239512-39239635)
chr8 (337-451)||(41743621-41743735)
chr8 (479-593)||(45281047-45281161)
chr8 (338-454)||(38697009-38697125)
chr8 (498-628)||(37400942-37401072)
chr8 (492-593)||(4810622-4810723)
chr8 (350-451)||(45394976-45395077)
chr8 (496-628)||(14030478-14030610)
chr8 (517-601)||(34504525-34504609)
chr8 (337-420)||(45437519-45437602)
chr8 (338-526)||(42877616-42877808)
chr8 (524-628)||(1659129-1659233)
chr8 (476-584)||(24192531-24192639)
chr8 (524-628)||(36803099-36803203)
chr8 (498-628)||(6337076-6337206)
chr8 (524-593)||(26696690-26696759)
chr8 (524-628)||(416395-416499)
chr8 (339-451)||(38696306-38696418)
chr8 (354-420)||(17702312-17702378)
chr8 (492-594)||(20180532-20180634)
chr8 (328-410)||(42878863-42878944)
chr8 (476-551)||(31845696-31845770)
chr8 (336-406)||(28420225-28420295)
chr8 (476-549)||(32798434-32798507)
chr8 (476-572)||(10669325-10669421)
chr8 (354-406)||(28418819-28418871)
chr8 (476-551)||(32695174-32695249)
chr8 (484-601)||(42872041-42872158)
chr8 (354-406)||(32797151-32797203)
chr8 (355-422)||(4810483-4810550)
chr8 (475-582)||(13117503-13117609)
chr8 (337-420)||(14840936-14841019)
chr8 (496-595)||(17455207-17455305)
chr8 (486-551)||(43202246-43202311)
chr8 (350-406)||(211604-211660)
chr8 (350-406)||(240596-240652)
chr8 (350-406)||(725227-725283)
chr8 (350-406)||(793951-794007)
chr8 (484-544)||(40437504-40437564)
[»] chr3 (35 HSPs)
chr3 (341-629)||(28909430-28909721)
chr3 (338-526)||(3455550-3455744)
chr3 (479-595)||(26886416-26886531)
chr3 (498-628)||(44175728-44175858)
chr3 (476-629)||(12107803-12107954)
chr3 (354-544)||(3208497-3208693)
chr3 (476-557)||(10301074-10301155)
chr3 (342-451)||(20288230-20288339)
chr3 (524-628)||(3807816-3807920)
chr3 (338-418)||(43173883-43173963)
chr3 (337-420)||(43174743-43174826)
chr3 (481-572)||(10338883-10338974)
chr3 (476-595)||(35371048-35371167)
chr3 (476-550)||(38242417-38242491)
chr3 (478-546)||(14745106-14745174)
chr3 (524-628)||(33705375-33705479)
chr3 (524-628)||(37981498-37981602)
chr3 (354-406)||(38247527-38247579)
chr3 (476-560)||(42685016-42685100)
chr3 (354-406)||(50809434-50809486)
chr3 (354-406)||(50810885-50810937)
chr3 (354-406)||(50864927-50864979)
chr3 (354-406)||(50866376-50866428)
chr3 (357-420)||(12108020-12108083)
chr3 (498-588)||(44182426-44182516)
chr3 (476-544)||(27841617-27841685)
chr3 (355-406)||(3209982-3210033)
chr3 (356-406)||(38242567-38242617)
chr3 (354-420)||(40244200-40244266)
chr3 (348-409)||(5122308-5122369)
chr3 (357-406)||(18197163-18197212)
chr3 (497-557)||(23559977-23560037)
chr3 (486-542)||(34819194-34819250)
chr3 (354-406)||(37735319-37735371)
chr3 (355-419)||(53624399-53624463)
[»] chr1 (36 HSPs)
chr1 (338-509)||(15746709-15746885)
chr1 (339-551)||(48096933-48097149)
chr1 (496-623)||(6049254-6049381)
chr1 (476-600)||(9226067-9226191)
chr1 (338-470)||(15743273-15743405)
chr1 (339-425)||(42244629-42244715)
chr1 (338-594)||(46318477-46318736)
chr1 (492-629)||(12665946-12666083)
chr1 (524-628)||(8027420-8027524)
chr1 (342-420)||(7161396-7161474)
chr1 (340-451)||(46468725-46468836)
chr1 (348-409)||(51042390-51042451)
chr1 (492-629)||(45584827-45584967)
chr1 (476-543)||(13147325-13147392)
chr1 (337-420)||(46467142-46467225)
chr1 (492-551)||(48527690-48527749)
chr1 (337-427)||(20064172-20064262)
chr1 (475-586)||(15232892-15233002)
chr1 (350-445)||(20069899-20069994)
chr1 (337-420)||(42245924-42246007)
chr1 (476-530)||(3617419-3617473)
chr1 (483-595)||(49801765-49801875)
chr1 (476-552)||(52078044-52078120)
chr1 (484-551)||(13894761-13894828)
chr1 (475-530)||(16965047-16965102)
chr1 (334-420)||(14479552-14479638)
chr1 (354-420)||(15071355-15071421)
chr1 (354-420)||(24499692-24499758)
chr1 (479-561)||(26802083-26802165)
chr1 (355-421)||(35943483-35943549)
chr1 (524-586)||(44278245-44278307)
chr1 (355-420)||(40634728-40634793)
chr1 (476-529)||(44999385-44999438)
chr1 (355-420)||(50444735-50444800)
chr1 (476-559)||(15072682-15072766)
chr1 (476-601)||(46110421-46110548)
[»] chr2 (38 HSPs)
chr2 (337-451)||(35904749-35904863)
chr2 (478-623)||(30748621-30748766)
chr2 (517-618)||(30749158-30749260)
chr2 (353-451)||(37956961-37957059)
chr2 (338-420)||(34147133-34147215)
chr2 (339-475)||(35903506-35903642)
chr2 (498-628)||(2384312-2384442)
chr2 (333-558)||(34512806-34513034)
chr2 (338-420)||(2276278-2276360)
chr2 (479-593)||(6030328-6030442)
chr2 (352-420)||(2277506-2277574)
chr2 (338-420)||(34148397-34148479)
chr2 (476-574)||(42641738-42641836)
chr2 (338-419)||(34513591-34513672)
chr2 (337-425)||(30749325-30749413)
chr2 (341-451)||(33995948-33996057)
chr2 (524-614)||(36215009-36215099)
chr2 (498-628)||(40323095-40323225)
chr2 (342-451)||(7753532-7753640)
chr2 (337-428)||(35061345-35061435)
chr2 (355-420)||(11317405-11317470)
chr2 (338-406)||(9474103-9474171)
chr2 (355-406)||(28562860-28562911)
chr2 (338-409)||(35061268-35061339)
chr2 (487-551)||(34467657-34467721)
chr2 (484-551)||(11317268-11317335)
chr2 (355-406)||(32469162-32469213)
chr2 (338-401)||(37956915-37956978)
chr2 (484-535)||(43033229-43033280)
chr2 (504-594)||(16290652-16290742)
chr2 (476-561)||(8320897-8320982)
chr2 (354-415)||(11547672-11547733)
chr2 (364-420)||(7437798-7437854)
chr2 (354-406)||(11315946-11315998)
chr2 (513-584)||(21664979-21665051)
chr2 (367-411)||(30748488-30748532)
chr2 (475-535)||(32469289-32469349)
chr2 (358-406)||(43033099-43033147)
[»] scaffold2071 (2 HSPs)
scaffold2071 (339-451)||(687-799)
scaffold2071 (484-560)||(573-649)
[»] scaffold1251 (1 HSPs)
scaffold1251 (338-420)||(1122-1204)
[»] chr5 (32 HSPs)
chr5 (341-526)||(8521255-8521444)
chr5 (338-526)||(1010291-1010483)
chr5 (339-451)||(9169584-9169697)
chr5 (337-420)||(32757821-32757904)
chr5 (337-451)||(8523752-8523866)
chr5 (524-628)||(27262606-27262710)
chr5 (498-613)||(31171014-31171129)
chr5 (337-420)||(32759085-32759168)
chr5 (498-628)||(28393375-28393505)
chr5 (476-600)||(27705168-27705291)
chr5 (484-551)||(1102766-1102833)
chr5 (524-614)||(41874167-41874257)
chr5 (339-451)||(1009182-1009294)
chr5 (338-406)||(10978330-10978398)
chr5 (354-406)||(24503197-24503249)
chr5 (355-406)||(24509087-24509138)
chr5 (337-405)||(20538049-20538117)
chr5 (354-434)||(34898974-34899054)
chr5 (476-551)||(11262533-11262608)
chr5 (476-551)||(22047874-22047949)
chr5 (342-429)||(26047814-26047901)
chr5 (354-405)||(34894162-34894213)
chr5 (337-406)||(10977018-10977087)
chr5 (331-420)||(11796559-11796648)
chr5 (476-561)||(30859061-30859146)
chr5 (478-530)||(30910885-30910937)
chr5 (358-551)||(39603870-39604070)
chr5 (493-544)||(9220365-9220416)
chr5 (524-629)||(223411-223517)
chr5 (476-526)||(1009325-1009375)
chr5 (357-406)||(22049187-22049236)
chr5 (353-406)||(22308850-22308903)
[»] scaffold0013 (1 HSPs)
scaffold0013 (476-624)||(32710-32862)
[»] scaffold0011 (2 HSPs)
scaffold0011 (338-535)||(127430-127632)
scaffold0011 (338-451)||(128597-128710)
[»] chr6 (15 HSPs)
chr6 (476-627)||(12669863-12670015)
chr6 (350-450)||(16208533-16208633)
chr6 (476-550)||(7311626-7311700)
chr6 (338-410)||(7308494-7308566)
chr6 (524-628)||(13847746-13847850)
chr6 (479-551)||(18346650-18346722)
chr6 (354-406)||(232189-232241)
chr6 (337-405)||(233616-233684)
chr6 (486-610)||(23392365-23392490)
chr6 (354-406)||(6452562-6452614)
chr6 (350-405)||(29722672-29722727)
chr6 (335-405)||(18346802-18346872)
chr6 (355-404)||(7311777-7311826)
chr6 (343-424)||(12780529-12780610)
chr6 (353-405)||(29381782-29381834)
[»] scaffold0035 (1 HSPs)
scaffold0035 (498-628)||(83045-83175)
[»] scaffold0031 (2 HSPs)
scaffold0031 (355-605)||(123983-124236)
scaffold0031 (355-406)||(125284-125335)
[»] scaffold0077 (1 HSPs)
scaffold0077 (476-552)||(54083-54159)
[»] scaffold0118 (1 HSPs)
scaffold0118 (476-552)||(43473-43549)
[»] scaffold0219 (1 HSPs)
scaffold0219 (476-584)||(8059-8166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (354-406)||(108526-108578)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 6e-82; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 337 - 618
Target Start/End: Original strand, 46201128 - 46201413
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctg 436  Q
    ||||||||| | ||||||||||| | ||| |||||| || ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| || |    
T  46201128 aaggcttaagaggtcatttggtctcataa-taattttcagttttcattttggtcccataagtaataaaactcatgttttgatcctttaattgtgtttccg 46201226  T
Q  437 tcggtcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaata 531  Q
    |||| ||||||||||    || ||||| |||||||||||     ||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||    
T  46201227 tcggccaaataaatccaagcctgttaagtttaaccccaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaata 46201326  T
Q  532 taaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaactt 618  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  46201327 taaactgtttgaccttttttattaaaagagtaccgttagatcatgcatgtctaccgtatcttacggtgaaccaaaaacatctaactt 46201413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 339 - 451
Target Start/End: Complemental strand, 46202401 - 46202289
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| ||| |||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||    
T  46202401 ggcttaataggtcgtttgatcccttaaataatttacagttttcattttgatcccataagtaataaaactcatgttctggtcatttaattgtgtctccgtc 46202302  T
Q  439 ggtcaaataaatc 451  Q
    |||||||||||||    
T  46202301 ggtcaaataaatc 46202289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 35211 - 35105
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| |||| |||||||||||||| |||||||| |||    
T  35211 ggcttaataggtcatttggtcccttaaataatttccaattttcattttggtcccatatctaataaaagtcatgttttggtcctttaactgtgtctccgtc 35112  T
Q  439 ggtcaaa 445  Q
     ||||||    
T  35111 tgtcaaa 35105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 339 - 451
Target Start/End: Original strand, 25533186 - 25533298
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||||||||||||||| ||||| ||||||| | ||||||||||| |||||||| |||||||| |||| ||||||||||| |||||| |||| |||    
T  25533186 ggcttaataagtcatttggtctcttaattaatttcaagttttcattttggtcccataactaataaaattcatgttttggtccttcaattgtatctccgtc 25533285  T
Q  439 ggtcaaataaatc 451  Q
    |||||||||||||    
T  25533286 ggtcaaataaatc 25533298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 38539668 - 38539780
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| |||||||| |||||||| ||||||| | ||||||||||| |||||||| ||||||||||||| ||||||||| |||||||| |||| ||    
T  38539668 aggcttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcatgttttggtcccttaattgtctctccgt 38539767  T
Q  438 cggtcaaataaat 450  Q
    |||||||| ||||    
T  38539768 cggtcaaaaaaat 38539780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 338 - 445
Target Start/End: Original strand, 27751 - 27858
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||  |||||||| |||| |||||||||||||| ||||| || ||    
T  27751 aggcttaataggtcatttggtcccttaaataatttccaattttcattttggttccatatctaataaaagtcatgttttggtcctttaactgtgtatccgt 27850  T
Q  438 cggtcaaa 445  Q
    | ||||||    
T  27851 ctgtcaaa 27858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 492 - 629
Target Start/End: Complemental strand, 669349 - 669212
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatc 591  Q
    |||||||||||||||||| ||| | |||||| | ||||| ||||  ||||||||||||||| |||||||  || |||||||||||||||| || ||||||    
T  669349 taagagtggtccaccatagatcctattaattttgttaatttaaaccgtttgatcttttttaataaaagataactgttagatcatgcatgtttattgtatc 669250  T
Q  592 ttacagtgaaccaaaaacatctaacttgatatcccatt 629  Q
    ||||| |||| ||| |||| ||||||| ||||| ||||    
T  669249 ttacaatgaatcaacaacaactaacttcatatctcatt 669212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 5095228 - 5095358
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  5095228 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 5095327  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  5095328 tgaaccaacaacatctagcattatatcccat 5095358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 24051365 - 24051495
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  24051365 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 24051464  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  24051465 tgaaccaacaacatctagcattatatcccat 24051495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 593
Target Start/End: Original strand, 40811461 - 40811578
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| ||||||| |||||||||||||||||| ||  | |||||  ||||||| ||||  |||||||||||||||||||||||  |  ||||||||||    
T  40811461 tatggtggaccaaccttaagagtggtccaccatagattctattaatatttttaatttaaaccgtttgatcttttttattaaaagataattgttagatcat 40811560  T
Q  576 gcatgtctactgtatctt 593  Q
    | ||||||| ||||||||    
T  40811561 gaatgtctattgtatctt 40811578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 524 - 628
Target Start/End: Original strand, 39752336 - 39752440
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||    
T  39752336 ttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatat 39752435  T
Q  624 cccat 628  Q
    |||||    
T  39752436 cccat 39752440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 43441486 - 43441561
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||| ||||||| ||||||||||||||||||| || | |||||||||||||| |||| |||||||| ||||||    
T  43441486 tatggtgtaccaaccttaagagtggtccaccataagtcctattaattattttaatgtaaactgtttgatatttttt 43441561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 594
Target Start/End: Original strand, 44372885 - 44372987
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatc 591  Q
    |||||||||||||||||| ||| | ||||||||||||||  |||  |||||||||||||| ||||||||| ||| |||||| |  |||||||| | ||||    
T  44372885 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccattagattacacatgtctattttatc 44372984  T
Q  592 tta 594  Q
    |||    
T  44372985 tta 44372987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 594
Target Start/End: Original strand, 44381741 - 44381843
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatc 591  Q
    |||||||||||||||||| ||| | ||||||||||||||  |||  |||||||||||||| ||||||||| ||| |||||| |  |||||||| | ||||    
T  44381741 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccattagattacacatgtctattttatc 44381840  T
Q  592 tta 594  Q
    |||    
T  44381841 tta 44381843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 406
Target Start/End: Original strand, 32254987 - 32255054
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||| ||| ||||||||||||| |||||||||| |||||| |||||| |||||||| |||||||||    
T  32254987 ggcttattaaatcatttggtccctcaaataatttcaaatttttattttggtcccataattaataaaac 32255054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 405
Target Start/End: Complemental strand, 35664380 - 35664333
Alignment:
Q  358 tcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  35664380 tcccttaattaatttccatttttcattttgatcccataagtaataaaa 35664333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 9662356 - 9662242
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctg 436  Q
    ||||||||||| ||||||||||||  ||| ||||||| | ||||||| ||  | |||||| ||| ||||||||| ||||||||| | |  | |||||| |    
T  9662356 aaggcttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcatgttttggtccctcacgtttgtctccg 9662257  T
Q  437 tcggtcaaataaatc 451  Q
    |||||||||||||||    
T  9662256 tcggtcaaataaatc 9662242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 9660730 - 9660783
Alignment:
Q  398 taataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaatc 451  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||| |||||    
T  9660730 taataaaactcatgttttggtcctttaattgtctctccgtcggtcaaaaaaatc 9660783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 546
Target Start/End: Original strand, 35295841 - 35295909
Alignment:
Q  478 tggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatct 546  Q
    ||||| ||||||| |||||||||||||||||| ||| | |||||||||||||| ||||  |||||||||    
T  35295841 tggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatct 35295909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 593
Target Start/End: Original strand, 45454211 - 45454266
Alignment:
Q  538 gtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatctt 593  Q
    ||||||||||||| |||||||||| | |||||||| |||||| |||||||||||||    
T  45454211 gtttgatctttttaattaaaagaggatcgttagattatgcatatctactgtatctt 45454266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 530
Target Start/End: Original strand, 32255131 - 32255185
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaat 530  Q
    ||||||| ||||||| |||||||||||||||||| ||| | ||||||||||||||    
T  32255131 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaat 32255185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 22537703 - 22537776
Alignment:
Q  479 ggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttta 552  Q
    |||||||||||| ||| |||| ||||||||| ||| | |||||||||||||| ||||  ||||||| |||||||    
T  22537703 ggtgaaccaaccttaatagtgatccaccatagatcctattaattattttaatttaaaccgtttgatttttttta 22537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 549
Target Start/End: Complemental strand, 43460798 - 43460725
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttt 549  Q
    ||||||| ||||||  |||||||||||||||||| ||| | |||||||||||||| ||||   |||||||||||    
T  43460798 tatggtggaccaactttaagagtggtccaccatagatcctattaattattttaatttaaaccctttgatctttt 43460725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 45455474 - 45455423
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||||| ||||||| ||||||||||||| ||||| || |||||||||    
T  45455474 tggtcccttaattaatttcaaattttcattttggtcccacaattaataaaac 45455423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 10942355 - 10942313
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataa 396  Q
    |||||||||||| |||||| || ||||||||||||||||||||    
T  10942355 ttggtcccttaattaattttcagttttcattttgatcccataa 10942313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 30333298 - 30333364
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| ||||||||||| | ||||||||||| ||||| || |||||||||  || |||||||||    
T  30333298 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtatcttttggtcc 30333364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 32256497 - 32256447
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    |||||||| |||||||||| | ||||||||||| |||||||| ||||||||    
T  32256497 tggtccctcaaataatttcaagttttcattttggtcccataattaataaaa 32256447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 41078931 - 41078981
Alignment:
Q  543 atcttttttattaaaagagtaccgttagatcatgcatgtctactgtatctt 593  Q
    ||||||||||||||||||  |  ||||||||||||||||||| ||||||||    
T  41078931 atcttttttattaaaagatgattgttagatcatgcatgtctattgtatctt 41078981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 6173552 - 6173487
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| |||||||||| | |||||||||||  ||||||| |||||||||  | ||||||||||    
T  6173552 tggtccctcaaataatttcaagttttcattttgtacccataattaataaaacgtacattttggtcc 6173487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 30311569 - 30311520
Alignment:
Q  357 gtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||| ||||||||||| ||||||||||||| ||||| || |||||||||    
T  30311569 gtcccctaaataatttcaaattttcattttggtcccacaattaataaaac 30311520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 559
Target Start/End: Original strand, 48312202 - 48312262
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaag 559  Q
    |||||||||||| ||| | |||||| ||||||| ||||| |||||||||||||| |||||||    
T  48312202 tggtccaccatagatcctattaatt-ttttaatttaaatggtttgatctttttttttaaaag 48312262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 560
Target Start/End: Original strand, 2414893 - 2414969
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaaga 560  Q
    ||||||| ||| |||||||||||||| ||| | |||||| | ||||| ||||  ||||||  |||||||||||||||    
T  2414893 accaaccttaaaagtggtccaccatagatcctattaattttcttaatttaaaccgtttgaatttttttattaaaaga 2414969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 9660119 - 9660167
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttg 387  Q
    ||||||||| ||||||||| ||||||| ||||||| | |||||||||||    
T  9660119 ggcttaataggtcatttggacccttaattaatttcaagttttcattttg 9660167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 9e-78; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 336 - 618
Target Start/End: Complemental strand, 28591026 - 28590738
Alignment:
Q  336 aaaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctct 435  Q
    ||||| |||||| || ||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||      
T  28591026 aaaggtttaataggttatttggtcccttaaataatttccagctttcattttggtcccataaataataaaactcatgttttggtcctttaattgtgtcttc 28590927  T
Q  436 gtcggtcaaataaatcattacccgttaaatttaaccccaa-------tatggtgaaccaaccataagagtggtccaccataaatcttgttaattatttta 528  Q
    || ||||||||||||  || ||||||||||||||||| ||       ||||||||||||||  |||||||| | || |||| ||| | ||||||||||||    
T  28590926 gttggtcaaataaatt-ttgcccgttaaatttaaccctaaatgtctatatggtgaaccaactttaagagtgattcatcatagatcctattaattatttta 28590828  T
Q  529 atataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaactt 618  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  28590827 atataaactgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctaccggatcttacggtgaatcaaaaacatctaactt 28590738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 476 - 629
Target Start/End: Complemental strand, 49896560 - 49896408
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| |||||||  |||||||||||||  || ||| |||||||||||||||| ||||  ||||||| |||||||||||||||| ||| |||||||||    
T  49896560 tatggtggaccaacctaaagagtggtccactgtagatcctgttaattattttaatttaaaccgtttgatattttttattaaaagagaaccattagatcat 49896461  T
Q  576 gcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatatcccatt 629  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||| |||| |||||    
T  49896460 gcatgtctattgtatcttacagtggacc-aaaacaactaacttaatataccatt 49896408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 339 - 551
Target Start/End: Original strand, 40723225 - 40723442
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttc-caattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    ||||||||| ||||||||||||| ||| ||||||  |||||||||||||| |||||||| ||||||||||||| ||||||||| |||  | | |||| ||    
T  40723225 ggcttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcatgttttggtcccttaggtttatctccgt 40723324  T
Q  438 cggtcaaataaatcattacccgttaaatttaacccca-----atatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatat 532  Q
    ||||||||||||||  || | ||||| ||||||| ||     |||||||| ||||||| ||||||||||| |||||| ||| | |||||||||| ||| |    
T  40723325 cggtcaaataaatccata-ctgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatgt 40723423  T
Q  533 aaattgtttgatctttttt 551  Q
     ||| ||||||||||||||    
T  40723424 taatcgtttgatctttttt 40723442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 338 - 451
Target Start/End: Complemental strand, 38698147 - 38698034
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||  |||||||| |||| |||||||||||||| |||||||| ||    
T  38698147 aggcttaataggtcatttggtcctttaaataatttccaattttcattttggtcccatatctaataaaagtcatgttttggtcctttaactgtgtctccgt 38698048  T
Q  438 cggtcaaataaatc 451  Q
    | |||||| |||||    
T  38698047 ctgtcaaaaaaatc 38698034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 492 - 600
Target Start/End: Original strand, 7053333 - 7053441
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatc 591  Q
    |||||||| ||||||||| ||| | |||||| ||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  7053333 taagagtgatccaccatagatcctattaatttttttaatttaaatcgtttgatcttttttattaaaagaggatcgttagatcatgcatgtctactgtatc 7053432  T
Q  592 ttacagtga 600  Q
    || ||||||    
T  7053433 tttcagtga 7053441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 28589782 - 28589890
Alignment:
Q  342 ttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggt 441  Q
    |||||| |||||||| ||||||||||||||| || ||||||||||| ||||||||||| ||||||| || ||||||| |||||||| |||||| ||||||    
T  28589782 ttaataggtcatttgatcccttaaataattttcagttttcattttggtcccataagtattaaaacttatgttttggtactttaattatgtctccgtcggt 28589881  T
Q  442 caaataaat 450  Q
    |||||||||    
T  28589882 caaataaat 28589890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 38695540 - 38695655
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||| |||||||||||||| ||| |||| ||    
T  38695540 aggcttaataggttatttggtcccttaaataattttcaattttcattttgatcccatatctaataaaaatcatgttttggtcctttaactgtctctccgt 38695639  T
Q  438 cggtcaaataaatcat 453  Q
    |  ||||| |||||||    
T  38695640 ctatcaaaaaaatcat 38695655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 484 - 593
Target Start/End: Complemental strand, 15450042 - 15449933
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtct 583  Q
    ||||||| |||||||||||||||||| ||| | |||||  ||||||| |||| |||||| |||||||||||||||||  | |||||||||||||||||||    
T  15450042 accaaccttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttgctcttttttattaaaagatgatcgttagatcatgcatgtct 15449943  T
Q  584 actgtatctt 593  Q
    | ||||||||    
T  15449942 agtgtatctt 15449933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 339 - 598
Target Start/End: Original strand, 53432060 - 53432325
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| ||| |||| |||||||| ||||||| | ||||||||||| ||||||||||||||||||| || ||||||||| | || | || ||  ||     
T  53432060 ggcttaataggtcgtttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaacttatgttttggtccctcaagtttgccttcgtt 53432159  T
Q  439 ggtcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatata 533  Q
    |||||||||||||  |  | ||||| |||||||||||     ||||||||||||||  |||||||||  ||||||| | ||| |||||| ||| ||| |     
T  53432160 ggtcaaataaatccctgacggttaagtttaaccccaaatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaatttt 53432259  T
Q  534 aattgtttgatcttttttatta-aaagagtaccgttagatcatgcatgtctactgtatcttacagt 598  Q
    ||  |||||||||||||| | | |||||| |||||| |||| || | ||| | |||||||||||||    
T  53432260 aaccgtttgatcttttttttaagaaagaggaccgttggatcgtgaaagtccattgtatcttacagt 53432325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 498 - 628
Target Start/End: Complemental strand, 23317255 - 23317125
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  23317255 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 23317156  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  23317155 tgaaccaacaacatctagcattatatcccat 23317125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 498 - 628
Target Start/End: Complemental strand, 25922331 - 25922201
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  25922331 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 25922232  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  25922231 tgaaccaacaacatctagcattatatcccat 25922201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 338 - 451
Target Start/End: Complemental strand, 40724961 - 40724850
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| ||||||||||||||||| |||||| || |||| |||||||||||  || ||||||||||||| ||||||||| |||| | |||||| ||    
T  40724961 aggcttaataggtcatttggtcccttaattaatttgcagtttttattttgatccc--aactaataaaactcatgttttggtcccttaagtttgtctccgt 40724864  T
Q  438 cggtcaaataaatc 451  Q
      ||||||||||||    
T  40724863 tagtcaaataaatc 40724850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 52240018 - 52240148
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttga-tcttttttattaaaagagtaccgttagatca 574  Q
    ||||||| ||||||| |||||||||||||||||| ||| | |||||  ||||||| ||||  |||||| | |||||||||||||||   |||||| ||||    
T  52240018 tatggtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttgatttttttttattaaaagatagccgttatatca 52240117  T
Q  575 tgcatgtctactgtatcttacagtgaaccaa 605  Q
    ||||||||||| ||||||| |||||| ||||    
T  52240118 tgcatgtctaccgtatcttccagtgagccaa 52240148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 528 - 628
Target Start/End: Complemental strand, 50997381 - 50997281
Alignment:
Q  528 aatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatatccca 627  Q
    ||||||||| ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||||||    
T  50997381 aatataaatcgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatatccca 50997282  T
Q  628 t 628  Q
    |    
T  50997281 t 50997281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 451
Target Start/End: Original strand, 34326729 - 34326839
Alignment:
Q  340 gcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcg 439  Q
    |||||||| ||||||||||||| ||| ||||||  ||||||||| || ||||||||| |||||||||| || ||||||||| |||  | ||||| |||||    
T  34326729 gcttaataggtcatttggtcccctaattaatttttaattttcatcttaatcccataa-taataaaacttatgttttggtcccttaggtttgtctttgtcg 34326827  T
Q  440 gtcaaataaatc 451  Q
    ||||||||||||    
T  34326828 gtcaaataaatc 34326839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 628
Target Start/End: Complemental strand, 22161708 - 22161578
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  |  |  ||||||||||||||||| |||||||||||| |    
T  22161708 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaagattgttagatcatgcatgtccactgtatcttactg 22161609  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  22161608 tgaaccaacaacatctagcattatatcccat 22161578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 344 - 417
Target Start/End: Complemental strand, 53435866 - 53435793
Alignment:
Q  344 aataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttgg 417  Q
    |||| |||||||| |||||||| ||||||| | ||||||||||| |||||||||||||||||||||| ||||||    
T  53435866 aataggtcatttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaactcatgttttgg 53435793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 669753 - 669682
Alignment:
Q  349 gtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||||||  || |||||| |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  669753 gtcatttggtcccccaattaattttcaattttcattttggtcccataattaataaaactcacattttggtcc 669682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 594
Target Start/End: Original strand, 44498601 - 44498719
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| | ||||| |||||||||||||||||| ||| | ||||||||||||||  |||  ||||||| |||||| ||||||||  ||| |||||| |     
T  44498601 tatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttcttaaaagatgaccattagattac 44498700  T
Q  576 gcatgtctactgtatctta 594  Q
    ||||||||| | |||||||    
T  44498701 gcatgtctattttatctta 44498719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 604
Target Start/End: Original strand, 56085487 - 56085614
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| || |||| |||||||||||||||||| ||| | |||||||||||||| ||||  ||||||| |||||| | ||| ||  |||||| |||||     
T  56085487 tatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat-ttttttttaaaaggatgaccgttggatcac 56085585  T
Q  576 gcatgtctactgtatcttacagtgaacca 604  Q
     ||||| || | |||||||||||||||||    
T  56085586 acatgtgtattttatcttacagtgaacca 56085614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 26629931 - 26630005
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||||||||||  ||||||||||||||||||  || | |||||||||||||| |||| |||||||||||||||    
T  26629931 tatggtgaaccaact-taagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatctttttt 26630005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 538 - 593
Target Start/End: Complemental strand, 42872243 - 42872188
Alignment:
Q  538 gtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatctt 593  Q
    |||||||||||||||||||||||| | |||||||| |||||| |||||||||||||    
T  42872243 gtttgatcttttttattaaaagaggatcgttagattatgcatatctactgtatctt 42872188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 13533380 - 13533266
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctg 436  Q
    ||||||||||| ||||||||||||  ||| ||||||| | ||||||| ||  | |||||| ||| ||||||||| ||||||||| | |  | |||||| |    
T  13533380 aaggcttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcatgttttggtccctcacgtttgtctccg 13533281  T
Q  437 tcggtcaaataaatc 451  Q
    |||||||||||||||    
T  13533280 tcggtcaaataaatc 13533266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 13531754 - 13531807
Alignment:
Q  398 taataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaatc 451  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||| |||||    
T  13531754 taataaaactcatgttttggtcctttaattgtctctccgtcggtcaaaaaaatc 13531807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 54485665 - 54485596
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||  ||| || ||||| ||||||||||| | |||||||||||||||||||| |||||||||    
T  54485665 aaggcttaatagatcacttagtcccctaaataatttcaagttttcattttgatcccataattaataaaac 54485596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 552
Target Start/End: Complemental strand, 2312456 - 2312380
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttta 552  Q
    ||||||| ||||| | ||| |||||||||||||| ||| | |||||||||||||| |||| |||||||| |||||||    
T  2312456 tatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgatttttttta 2312380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 560
Target Start/End: Original strand, 13165635 - 13165718
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaaga 560  Q
    ||||||| ||||||| |||||||||||||||||| |  |  |||||||||||||| ||||  |||||||||||||| ||||||||    
T  13165635 tatggtggaccaaccttaagagtggtccaccatagacttcattaattattttaatttaaaccgtttgatctttttt-ttaaaaga 13165718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 390230 - 390296
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| ||||||||||| | ||||||||||| ||||| || |||||||||  ||||||||||||    
T  390230 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtatattttggtcc 390296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 2162622 - 2162688
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||  ||| |||||| || ||||||||||  |||||||| |||||||||||||||||||||||    
T  2162622 ttggtcctctaattaattttcagttttcattttagtcccataactaataaaactcatattttggtcc 2162688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 14524966 - 14524892
Alignment:
Q  342 ttaataagtcatttggtcccttaaataatttccaatttt-cattttgatcccataagtaataaaactcatatttt 415  Q
    |||||| |||| ||||||| |||| ||||||| | |||| |||||||||||||||| ||||||||||||| ||||    
T  14524966 ttaataggtcacttggtcctttaattaatttcaagtttttcattttgatcccataattaataaaactcatgtttt 14524892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 557
Target Start/End: Complemental strand, 27850913 - 27850831
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttga-tcttttttattaaa 557  Q
    ||||||| ||||||| ||| |||||||||||||| ||| | |||||||||||||| ||||  |||||| |||||||| |||||    
T  27850913 tatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgattctttttttttaaa 27850831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 668384 - 668465
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||||||||||| |||   || |||||| || ||||||||||| || ||||| ||||||||||||  |||||||||    
T  668384 ggcttaataagtcatttgatcctccaattaattttcagttttcattttggtctcataactaataaaactcacgttttggtcc 668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 27851034 - 27850969
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| |||||||||| | ||||||||||| ||||| || |||||||||  ||||||||||||    
T  27851034 tggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtatattttggtcc 27850969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 560
Target Start/End: Original strand, 36845566 - 36845633
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaaga 560  Q
    ||||||||||||||||||  || | |||||||||||||| |||| |||||||| |||||| ||||||||    
T  36845566 taagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatatttttt-ttaaaaga 36845633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 7053176 - 7053259
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||||||||| |||||||  |||| ||| |||||| || ||| ||||||| | |||||| |||||||||| ||||||| ||||    
T  7053176 aaggcttaataggtcattttttcccctaattaattttcagtttacattttggttccataattaataaaacttatatttttgtcc 7053259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 595
Target Start/End: Original strand, 7707738 - 7707848
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtct 583  Q
    ||||||| |||||||||||||||||| ||| | |||||||||||||| | ||  ||||||| |||||  ||||||||| ||| || ||| | ||| ||||    
T  7707738 accaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgat-tttttctttaaaagagaaccattggattaggcaggtct 7707836  T
Q  584 actgtatcttac 595  Q
    | | ||||||||    
T  7707837 attttatcttac 7707848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 551
Target Start/End: Complemental strand, 19750246 - 19750195
Alignment:
Q  500 gtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    |||||||||| ||| | |||||||||||||| ||||| ||||||||||||||    
T  19750246 gtccaccatagatcctattaattattttaatttaaatcgtttgatctttttt 19750195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 551
Target Start/End: Original strand, 19789560 - 19789611
Alignment:
Q  500 gtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    |||||||||| ||| | |||||||||||||| ||||| ||||||||||||||    
T  19789560 gtccaccatagatcctattaattattttaatttaaatcgtttgatctttttt 19789611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 52239891 - 52239942
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||| |||||||||| |||||| |||||||||||| || |||||||||    
T  52239891 tggtccctcaaataatttcaaatttttattttgatcccacaattaataaaac 52239942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 545
Target Start/End: Original strand, 1794552 - 1794622
Alignment:
Q  475 atatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatc 545  Q
    |||||||| ||||||| |||||||||||||||||| | ||| |||| | ||||||| ||||  ||||||||    
T  1794552 atatggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatc 1794622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 629
Target Start/End: Complemental strand, 38555207 - 38555101
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaag-agtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgata 622  Q
    ||||||| ||||  ||||||||||||||||| |||| || ||| || ||| |  |||||||| | |||||||| ||||  ||| |||||||||||| |||    
T  38555207 ttttaatttaaaccgtttgatcttttttatttaaaggagaaccattggattacacatgtctattttatcttacggtgagtcaacaacatctaactttata 38555108  T
Q  623 tcccatt 629  Q
    |||||||    
T  38555107 tcccatt 38555101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 393739 - 393690
Alignment:
Q  356 ggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    ||||||| |||||||||| ||||||||||||| ||||| || ||||||||    
T  393739 ggtccctcaaataatttcaaattttcattttggtcccacaattaataaaa 393690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 42810303 - 42810254
Alignment:
Q  357 gtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||||||||||| | ||||||||||| ||||| || |||||||||    
T  42810303 gtcccttaaataatttcaacttttcattttggtcccacaattaataaaac 42810254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 1190295 - 1190243
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||| |||||||||  | ||||||||||| |||||||| |||||||||    
T  1190295 ttggtccctcaaataattttaagttttcattttggtcccataattaataaaac 1190243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 3921234 - 3921182
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||| |||||| || ||||||||||| || ||||| |||||||||    
T  3921234 ttggtcccttaattaattttcagttttcattttggtctcataaataataaaac 3921182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 13531143 - 13531191
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttg 387  Q
    ||||||||| ||||||||| ||||||| ||||||| | |||||||||||    
T  13531143 ggcttaataggtcatttggacccttaattaatttcaagttttcattttg 13531191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 39239635 - 39239512
Alignment:
Q  216 tgtaaatatctatggtttctttaaaaaatacactcacgtcattttatagaatcactttttgaccgcgg-aatttaacatataagtgattgatgcaaaaac 314  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  39239635 tgtaaatatctatggttactttaaaaagtacactcacgtcattttatagaatcattttttgaccgcggaaatttaacatataagtgattgatgcaaaaac 39239536  T
Q  315 acgcatgagtgttataattttaaa 338  Q
    ||||||||||||||||||||||||    
T  39239535 acgcatgagtgttataattttaaa 39239512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 41743735 - 41743621
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctg 436  Q
    ||||||||||| |||||||||||| |||| ||||||  | ||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||| |    
T  41743735 aaggcttaataggtcatttggtcctttaattaattttaagttttcattttggtcccataagtaataaaacttatgttttggtcctttaattgtttctccg 41743636  T
Q  437 tcggtcaaataaatc 451  Q
    ||||||||| |||||    
T  41743635 tcggtcaaaaaaatc 41743621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 479 - 593
Target Start/End: Complemental strand, 45281161 - 45281047
Alignment:
Q  479 ggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgca 578  Q
    |||| ||||||| ||||||||||| |||||||||| | |||||  ||||||| ||||  |||||||||||||||||||||||  | ||||||||||||||    
T  45281161 ggtggaccaaccttaagagtggtctaccataaatcctattaatatttttaatttaaaccgtttgatcttttttattaaaagatgaacgttagatcatgca 45281062  T
Q  579 tgtctactgtatctt 593  Q
    |||||||||||||||    
T  45281061 tgtctactgtatctt 45281047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 338 - 454
Target Start/End: Complemental strand, 38697125 - 38697009
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    ||||||||||  ||||||||||||| || ||||||||| ||||||||||| |||||||| ||||||||||||| ||||| ||||| |  | || ||| ||    
T  38697125 aggcttaatagctcatttggtccctcaattaatttccagttttcattttggtcccataactaataaaactcatgttttgatccttcacatttgcctccgt 38697026  T
Q  438 cggtcaaataaatcatt 454  Q
    |||||||||||||||||    
T  38697025 cggtcaaataaatcatt 38697009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 37400942 - 37401072
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||||||| ||| | |||||| ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||  |||||||||||| |    
T  37400942 tggtccaccatagatcctattaatttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgttcactgtatcttactg 37401041  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  37401042 tgaaccaacaacatctagcattatatcccat 37401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 492 - 593
Target Start/End: Original strand, 4810622 - 4810723
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatc 591  Q
    |||||||||||||||||| ||| | |||||  ||||||| |||| ||||||||||||||||||||||||| | ||||||||||| ||| |||| ||||||    
T  4810622 taagagtggtccaccatagatcctattaatatttttaatttaaactgtttgatcttttttattaaaagaggatcgttagatcatacatatctattgtatc 4810721  T
Q  592 tt 593  Q
    ||    
T  4810722 tt 4810723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 350 - 451
Target Start/End: Original strand, 45394976 - 45395077
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaa 449  Q
    ||||||| |||||||| ||||||  | |||||||||||||||||||| ||||||||||||| |||||||   |||||||| ||||||||| |||||||||    
T  45394976 tcatttgatcccttaattaattttaagttttcattttgatcccataattaataaaactcatgttttggttacttaattgtctctctgtcgatcaaataaa 45395075  T
Q  450 tc 451  Q
    ||    
T  45395076 tc 45395077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 496 - 628
Target Start/End: Original strand, 14030478 - 14030610
Alignment:
Q  496 agtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttac 595  Q
    |||||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| ||||||||||||    
T  14030478 agtggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttac 14030577  T
Q  596 agtgaaccaaaaacatctaacttgatatcccat 628  Q
     ||||||||| |||||||| | | |||||||||    
T  14030578 tgtgaaccaacaacatctagcattatatcccat 14030610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 517 - 601
Target Start/End: Complemental strand, 34504609 - 34504525
Alignment:
Q  517 ttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaa 601  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||    
T  34504609 ttaatttttttaatttaaactctttgatcttttttattaaaagaggatcgttagatcatgcatgtctactatatcttacggtgaa 34504525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 45437602 - 45437519
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||||||||| |||||||| |||| ||| ||||||| | |||||||||||||||||||| ||||||||||||| |||||||||    
T  45437602 aaggcttaataggtcatttgatcccctaattaatttcaagttttcattttgatcccataattaataaaactcatgttttggtcc 45437519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 338 - 526
Target Start/End: Original strand, 42877616 - 42877808
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| || |||||||| ||||| ||||||| | ||||||||||| || ||||| ||||||||||||| ||||||||| | |  | |||||  ||    
T  42877616 aggcttaataggttatttggtctcttaattaatttcaagttttcattttggtctcataactaataaaactcatgttttggtccctcacgtttgtcttcgt 42877715  T
Q  438 cggtcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattt 526  Q
    | ||||||||||||   | | ||||| |||||||||||     ||||||| ||||||| ||||| |||||||||||| ||| | ||||||||||    
T  42877716 cagtcaaataaatcccga-cggttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 42877808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 524 - 628
Target Start/End: Complemental strand, 1659233 - 1659129
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||    
T  1659233 ttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatat 1659134  T
Q  624 cccat 628  Q
    |||||    
T  1659133 cccat 1659129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 584
Target Start/End: Complemental strand, 24192639 - 24192531
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| ||||||| |||||||||||||||||| ||| | ||||||||||||||  |||  ||||||| |||||| ||||||||| ||| |||||| |     
T  24192639 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttcttaaaagagaaccattagattac 24192540  T
Q  576 gcatgtcta 584  Q
    |||||||||    
T  24192539 gcatgtcta 24192531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 524 - 628
Target Start/End: Complemental strand, 36803203 - 36803099
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||    
T  36803203 ttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatat 36803104  T
Q  624 cccat 628  Q
    |||||    
T  36803103 cccat 36803099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 628
Target Start/End: Complemental strand, 6337206 - 6337076
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  |  |  ||||||||||||||||| |||||||||||| |    
T  6337206 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaagattgttagatcatgcatgtccactgtatcttactg 6337107  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  6337106 tgaaccaacaacatctagcattatatcccat 6337076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 524 - 593
Target Start/End: Original strand, 26696690 - 26696759
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatctt 593  Q
    ||||||| ||||  |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  26696690 ttttaatttaaaccgtttgatcttttttattaaaagaggatcgttagattatgcatgtctactgtatctt 26696759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 524 - 628
Target Start/End: Complemental strand, 416499 - 416395
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  |  |  ||||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||    
T  416499 ttttaatataaaccgtttgatcttttttaataaagaatgattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatat 416400  T
Q  624 cccat 628  Q
    |||||    
T  416399 cccat 416395  T

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Target: chr8; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 339 - 451
Target Start/End: Original strand, 38696306 - 38696418
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| | ||||||||||| ||| ||||||  | ||||||||||| || ||||| ||||||||||||| ||||||||| | || | || ||| |||    
T  38696306 ggcttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtccctcaagtttgcctccgtc 38696405  T
Q  439 ggtcaaataaatc 451  Q
    |||||||||||||    
T  38696406 ggtcaaataaatc 38696418  T

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Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 17702378 - 17702312
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||||||||  || |||||||||    
T  17702378 ttggtcccttaattaatttccaattttcattttggtcccataactaataaaacctatgttttggtcc 17702312  T

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Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 594
Target Start/End: Complemental strand, 20180634 - 20180532
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatc 591  Q
    |||||||||||||||||| ||| | ||||||||||||||  |||  |||||||||||||| ||||||||| ||| |||||| |  |||||||| | ||||    
T  20180634 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatcttttttcttaaaagaggaccattagattacacatgtctattttatc 20180535  T
Q  592 tta 594  Q
    |||    
T  20180534 tta 20180532  T

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Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 42878944 - 42878863
Alignment:
Q  328 ataattttaaaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcat 410  Q
    |||||||||| ||||||||| ||||||||||||| ||| ||||||| | ||||||||||| |||||||| |||| ||||||||    
T  42878944 ataattttaa-ggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaatgaaactcat 42878863  T

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Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 551
Target Start/End: Complemental strand, 31845770 - 31845696
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||||||||||  ||||||||||||||||||  || | |||||||||||||| |||| |||||||||||||||    
T  31845770 tatggtgaaccaact-taagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatctttttt 31845696  T

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Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 28420295 - 28420225
Alignment:
Q  336 aaaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||||||  ||  |||||||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  28420295 aaaggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 28420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 549
Target Start/End: Complemental strand, 32798507 - 32798434
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttt 549  Q
    ||||||| | ||||| |||||||||||||||||| ||| | |||||||||||||| ||||  ||||||||||||    
T  32798507 tatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatctttt 32798434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 572
Target Start/End: Complemental strand, 10669421 - 10669325
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagat 572  Q
    ||||||||||||||| |||||||||||||||||| ||| | |||| ||||||||| ||||  | |||||   |||| ||||||||| || |||||||    
T  10669421 tatggtgaaccaaccttaagagtggtccaccatagatcctattaaatattttaatttaaaccgattgataaatttttttaaaagaggacggttagat 10669325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 28418819 - 28418871
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  28418819 ttggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 28418871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 551
Target Start/End: Complemental strand, 32695249 - 32695174
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||||||||| | ||||| |||||||||||| ||| | |||||||||||||| ||||  ||||||| ||||||    
T  32695249 tatggtgaaccaatcttaagattggtccaccatagatcctattaattattttaatttaaaccgtttgatttttttt 32695174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 601
Target Start/End: Complemental strand, 42872158 - 42872041
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttt-tattaaaagagtaccgttagatcatgcatgtc 582  Q
    ||||||| ||||||||||| |||||| ||| | |||||| |||||||||||    || |||| |||| |||||||  || || |||||||||||||||||    
T  42872158 accaaccttaagagtggtctaccatagatcctattaatt-ttttaatataacccattcgatccttttgtattaaagtaggactgttagatcatgcatgtc 42872060  T
Q  583 tactgtatcttacagtgaa 601  Q
    || |||||||||| |||||    
T  42872059 tattgtatcttactgtgaa 42872041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 32797151 - 32797203
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||||||| | ||||||||||| ||||| || |||||||||    
T  32797151 ttggtcccttaaataatttcaagttttcattttggtcccacaattaataaaac 32797203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 4810483 - 4810550
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctt 422  Q
    |||||||| ||||| |||| |||||| |||||| |||||||| |||||||||  || |||||||||||    
T  4810483 tggtccctcaaatactttcaaatttttattttggtcccataattaataaaacgtatgttttggtcctt 4810550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 582
Target Start/End: Complemental strand, 13117609 - 13117503
Alignment:
Q  475 atatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatca 574  Q
    |||| ||| ||||||  ||| ||||||||| |||| ||| | |||||||||||||||| ||  ||||||| |||||| ||||||||| ||| || ||| |    
T  13117609 atatagtggaccaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttgatgtttttt-ttaaaagagaaccattggatta 13117511  T
Q  575 tgcatgtc 582  Q
    ||||||||    
T  13117510 tgcatgtc 13117503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 14841019 - 14840936
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||| |||||| || ||||||||  || | ||||||| ||||||||||||| | |||||| |||||||| |||| |||||||||    
T  14841019 aaggtttaataggttatttggtcttttgattaatttcaaattttcattttggtaccataactaataaaattcatgttttggtcc 14840936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 595
Target Start/End: Original strand, 17455207 - 17455305
Alignment:
Q  496 agtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttac 595  Q
    |||||||||||||| ||||| |||||||||||||| | ||  |||| |||| |||| ||||||||| ||| |||||| | ||| ||||| | ||||||||    
T  17455207 agtggtccaccatagatcttattaattattttaatttgaaccgttttatctatttt-ttaaaagaggaccattagattacgcaggtctattttatcttac 17455305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 551
Target Start/End: Original strand, 43202246 - 43202311
Alignment:
Q  486 caaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||| |||||||||||||||||| ||| | ||| |||||| ||| |||| |||||||| ||||||    
T  43202246 caaccttaagagtggtccaccatagatcctattagttatttaaatttaaactgtttgatttttttt 43202311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 211604 - 211660
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||| ||||||||||||||||   ||||||||||| ||||| || |||||||||    
T  211604 tcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaac 211660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 240652 - 240596
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||| ||||||||||||||||   ||||||||||| ||||| || |||||||||    
T  240652 tcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaac 240596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 725227 - 725283
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||| ||||||||||||||||   ||||||||||| ||||| || |||||||||    
T  725227 tcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaac 725283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 794007 - 793951
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||| ||||||||||||||||   ||||||||||| ||||| || |||||||||    
T  794007 tcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaac 793951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 40437564 - 40437504
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgat 544  Q
    ||||||| ||| ||||||||||| || ||| | |||||||||||||| |||| ||||||||    
T  40437564 accaaccttaaaagtggtccaccgtagatcctattaattattttaatttaaactgtttgat 40437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 341 - 629
Target Start/End: Complemental strand, 28909721 - 28909430
Alignment:
Q  341 cttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcgg 440  Q
    ||||||| ||||||  ||||  ||| |||||| || ||||||||||| |||||||| ||||||||||||| ||||||||| | |  | |||||| || ||    
T  28909721 cttaataggtcattcagtcctctaattaattttcagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgttgg 28909622  T
Q  441 tcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaa 535  Q
    |||||||||||  |  |  |||| |||||||||||     | ||||||||||  | ||||  |||||||||||| ||| | |||||| ||||||| ||||    
T  28909621 tcaaataaatctctgac--ttaagtttaaccccaaatatctgtggtgaaccactcttaaggttggtccaccatagatcctattaatttttttaatttaaa 28909524  T
Q  536 ttgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatatcccatt 629  Q
     || |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||||    
T  28909523 ctggttgatcttttttattaaaagaggacggttagatcatgcatgtctactgtatcttacggtgaactaacaacatctaactttatatcccatt 28909430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 338 - 526
Target Start/End: Complemental strand, 3455744 - 3455550
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| |||||||||||||  || ||||||| | ||||||||||| || ||||| ||||||||||||| ||||||||||| |  | |||||| ||    
T  3455744 aggcttaataggtcatttggtccccgaattaatttcaagttttcattttggtctcataactaataaaactcatgttttggtccttcatgtttgtctccgt 3455645  T
Q  438 cggtcaaataaatcattacccgttaaatttaa--ccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattt 526  Q
    | |||||||||||| | | | ||||| |||||  ||||||     ||||||| ||||||| |||||||||||||||||| ||| | ||||||||||    
T  3455644 cagtcaaataaatcctga-cagttaactttaaccccccaaaatgttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 3455550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 479 - 595
Target Start/End: Original strand, 26886416 - 26886531
Alignment:
Q  479 ggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgca 578  Q
    |||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||  ||||||| |||||| ||||||| | ||| || ||| |||||    
T  26886416 ggtgaaccaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgat-tttttttttaaaagggaaccattggattatgca 26886514  T
Q  579 tgtctactgtatcttac 595  Q
    |||||| | ||||||||    
T  26886515 tgtctattttatcttac 26886531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 44175728 - 44175858
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  44175728 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 44175827  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  44175828 tgaaccaacaacatctagcattatatcccat 44175858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 629
Target Start/End: Complemental strand, 12107954 - 12107803
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| ||||||| ||| |||||||||||||| | | | ||  || ||||||||||||  |||||||||||||||||||| ||| ||| |||||||||    
T  12107954 tatggtggaccaaccttaaaagtggtccaccatagaccctatttttt-ttttaatataaaccgtttgatcttttttattaaaggaggaccattagatcat 12107856  T
Q  576 gcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatatcccatt 629  Q
    ||| ||||||| |||||||  ||||||||   ||||||||| | ||||||||||    
T  12107855 gcaggtctact-tatcttattgtgaaccatcgacatctaacattatatcccatt 12107803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 354 - 544
Target Start/End: Original strand, 3208497 - 3208693
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaatcat 453  Q
    |||||||  ||| ||||||||| ||||||||||| |||||||| |||||||||  |  ||||| ||| ||| || |  ||| ||  |||||||||||| |    
T  3208497 ttggtcctctaattaatttccatttttcattttggtcccataattaataaaacgtacgttttgatcccttattttttcctccgtttgtcaaataaatcct 3208596  T
Q  454 tacccgttaaatttaaccccaa-------tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgat 544  Q
    |||| ||||| |||||||||||       ||||||| ||||||| |||||||||||||||||||||| | ||||||||| |||| ||||  |||||||    
T  3208597 tacc-gttaagtttaaccccaaatgatattatggtggaccaaccttaagagtggtccaccataaatcctattaattattataatttaaaccgtttgat 3208693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 476 - 557
Target Start/End: Original strand, 10301074 - 10301155
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaa 557  Q
    ||||||||||||||| |||||||| ||||||||| ||| | |||||||||||||| |||| |||||||| |||||| |||||    
T  10301074 tatggtgaaccaaccttaagagtgatccaccatagatcctattaattattttaatttaaactgtttgatttttttttttaaa 10301155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 20288339 - 20288230
Alignment:
Q  342 ttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggt 441  Q
    |||||| | ||||||||||| ||| ||||||  | |||||||||||||||||||| ||||||||||||| | ||||||| | || | |||||||||  ||    
T  20288339 ttaataggccatttggtcccctaattaatttttagttttcattttgatcccataattaataaaactcatgtgttggtccctcaagtttgtctctgttagt 20288240  T
Q  442 caaataaatc 451  Q
    ||||||||||    
T  20288239 caaataaatc 20288230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 524 - 628
Target Start/End: Complemental strand, 3807920 - 3807816
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| | |||||||||| ||||||||| |||||||| | | ||||    
T  3807920 ttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccattgtatcttactgtgaaccaacaacatctagcattatat 3807821  T
Q  624 cccat 628  Q
    |||||    
T  3807820 cccat 3807816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 418
Target Start/End: Original strand, 43173883 - 43173963
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggt 418  Q
    |||||||||| |||||||| |||| ||| |||||||||||||||||||||  ||||||| |||||||| |||| |||||||    
T  43173883 aggcttaataggtcatttgatcccctaattaatttccaattttcattttgtccccataactaataaaattcatgttttggt 43173963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 43174826 - 43174743
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||| |||||| ||||||||||||||||  ||||||  | |||||||||||| ||||||| ||||||||||||| |||||||||    
T  43174826 aaggtttaatatgtcatttggtcccttatttaattttaagttttcattttgaccccataactaataaaactcatgttttggtcc 43174743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 572
Target Start/End: Original strand, 10338883 - 10338974
Alignment:
Q  481 tgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagat 572  Q
    |||||||||| |||||||||||||||||| ||| | |||||||||||||| | || |||||||| |||||| || ||| || || |||||||    
T  10338883 tgaaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactgtttgattttttttttttaaataggacggttagat 10338974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 595
Target Start/End: Original strand, 35371048 - 35371167
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| ||||||| |||||||||||||||||| ||| | |||||||||||||| | || | |||||| |||||| | ||||||| ||| || ||| |     
T  35371048 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactttttgattttttttttaaaaagagaaccattggattag 35371147  T
Q  576 gcatgtctactgtatcttac 595  Q
    ||| ||||| | ||||||||    
T  35371148 gcaagtctattttatcttac 35371167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 476 - 550
Target Start/End: Complemental strand, 38242491 - 38242417
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttt 550  Q
    ||||||| ||||||| |||||||||||||||||||||  | |||||||||||||| ||||  ||||||| |||||    
T  38242491 tatggtggaccaaccttaagagtggtccaccataaattctattaattattttaatttaaaccgtttgattttttt 38242417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 546
Target Start/End: Complemental strand, 14745174 - 14745106
Alignment:
Q  478 tggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatct 546  Q
    ||||| ||||||| |||||||||| ||||||| ||| | |||||||||||||| |||| ||||||||||    
T  14745174 tggtggaccaaccttaagagtggttcaccatagatcctattaattattttaatttaaactgtttgatct 14745106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 628
Target Start/End: Original strand, 33705375 - 33705479
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  |  |   |||||||||||||||| ||||||||||||  |||||||| |||||||| | | ||||    
T  33705375 ttttaatataaaccgtttgatcttttttaataaagaaagattattagatcatgcatgtccactgtatcttactatgaaccaacaacatctagcattatat 33705474  T
Q  624 cccat 628  Q
    |||||    
T  33705475 cccat 33705479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 628
Target Start/End: Complemental strand, 37981602 - 37981498
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  |||||||| |||||| ||||  || |  ||||||||||||||||| |||||||||| | |||||| || |||||||| | | ||||    
T  37981602 ttttaatataaaccgtttgatcctttttaataaagaaggattgttagatcatgcatgtccactgtatcttgctgtgaactaacaacatctagcattatat 37981503  T
Q  624 cccat 628  Q
    |||||    
T  37981502 cccat 37981498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 38247579 - 38247527
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||| ||||||||||||||||||||| ||  ||||||||||||||    
T  38247579 ttggtcccttaattaatttccaattttcattttggtcatataagtaataaaac 38247527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 560
Target Start/End: Original strand, 42685016 - 42685100
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaaga 560  Q
    ||||||||||||| | |||||||||||||||||||| ||| |||| | ||||||| ||||  ||||||||| |||| | ||||||    
T  42685016 tatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttgatctgttttttaaaaaga 42685100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 50809434 - 50809486
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  50809434 ttggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50809486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 50810937 - 50810885
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  50810937 ttggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50810885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 50864927 - 50864979
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  50864927 ttggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50864979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 50866428 - 50866376
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  50866428 ttggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 50866376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 12108083 - 12108020
Alignment:
Q  357 gtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||||||||||||||| | ||||||||||| ||||| || |||||||||  ||||||||||||    
T  12108083 gtcccttaaataatttcaagttttcattttggtcccacaactaataaaacatatattttggtcc 12108020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 588
Target Start/End: Original strand, 44182426 - 44182516
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgt 588  Q
    |||||||| ||| ||| | ||| || |||||||||||| |||||||||||||||| ||||  || |  ||||||||||||||||| |||||    
T  44182426 tggtccactatagatcctattattttttttaatataaactgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgt 44182516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 544
Target Start/End: Complemental strand, 27841685 - 27841617
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgat 544  Q
    ||||||| ||||||| |||||||||||||||||| ||| |  ||||||||||||| | || ||||||||    
T  27841685 tatggtggaccaaccttaagagtggtccaccatagatcctaataattattttaattttaactgtttgat 27841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 3210033 - 3209982
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||||||||||||  ||||||||||||| ||||| || |||||||||    
T  3210033 tggtcccttaaataattttaaattttcattttggtcccacaattaataaaac 3209982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 38242617 - 38242567
Alignment:
Q  356 ggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||| |||||||||| | ||||||||||||||||| || |||||||||    
T  38242617 ggtccctcaaataatttcaagttttcattttgatcccacaattaataaaac 38242567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 40244200 - 40244266
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||||||||||||| | ||||||||||| || || || |||||||||  | ||||||||||    
T  40244200 ttggtcccttaaataatttcaagttttcattttggtctcacaattaataaaacgtacattttggtcc 40244266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 5122308 - 5122369
Alignment:
Q  348 agtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactca 409  Q
    |||||||||||||   || ||||||||| ||||||||||| | |||||| ||||||||||||    
T  5122308 agtcatttggtcctccaattaatttccatttttcattttgcttccataattaataaaactca 5122369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 18197163 - 18197212
Alignment:
Q  357 gtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||| |||||||||| ||||||||||||| ||||| || |||||||||    
T  18197163 gtccctcaaataatttcaaattttcattttggtcccacaattaataaaac 18197212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 557
Target Start/End: Original strand, 23559977 - 23560037
Alignment:
Q  497 gtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaa 557  Q
    ||||||||||||| ||||| |||| | ||||| | | |||||||||||||||||| |||||    
T  23559977 gtggtccaccatagatcttattaaatcttttatttttaattgtttgatctttttttttaaa 23560037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 34819250 - 34819194
Alignment:
Q  486 caaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttg 542  Q
    ||||| |||||||||||||||||| ||| | ||| |||||||||| |||| ||||||    
T  34819250 caaccttaagagtggtccaccatagatcctattacttattttaatttaaactgtttg 34819194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 37735319 - 37735371
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||| |||||||||||  | ||||||||||| |||||||| |||||||||    
T  37735319 ttggtcctttaaataattttaagttttcattttggtcccataattaataaaac 37735371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 53624463 - 53624399
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtc 419  Q
    |||||||| |||||||||| | |||||||||||||| || || |||||||||  | |||||||||    
T  53624463 tggtccctcaaataatttcaagttttcattttgatctcacaattaataaaacgtacattttggtc 53624399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 338 - 509
Target Start/End: Complemental strand, 15746885 - 15746709
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||| ||    
T  15746885 aggcttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtcccttaattgtatctccgt 15746786  T
Q  438 cggtcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccata 509  Q
    | ||||||||||||||   | ||||| ||||||  |||     ||||||| ||||| | ||||||||||||||||||    
T  15746785 cagtcaaataaatcatccactgttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccata 15746709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 339 - 551
Target Start/End: Complemental strand, 48097149 - 48096933
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| ||||||| ||||  ||| |||||||||||||| |||||| |||||||| ||||||||||||| |||| |||| |||  | |||||| |||    
T  48097149 ggcttaataggtcatttagtcctctaattaatttccaatttttattttggtcccataactaataaaactcatgttttagtcccttaggtttgtctccgtc 48097050  T
Q  439 ggtcaaataaatcattacccgttaaatttaacccca-----atatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatata 533  Q
    |||||||||||||  || | ||||| ||||||| ||     |||||||| ||||||| ||||||||||| |||||| ||| | |||||||||| |||||     
T  48097049 ggtcaaataaatcccta-ctgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatatt 48096951  T
Q  534 aattgtttgatctttttt 551  Q
    ||| ||||||||||||||    
T  48096950 aatcgtttgatctttttt 48096933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 6049381 - 6049254
Alignment:
Q  496 agtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttac 595  Q
    ||||||||||| || ||| |||||||||||||||| ||||  | ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  6049381 agtggtccaccgtagatcctgttaattattttaatttaaaccgattgatattttttattaaaagaggaccattagatcatgcatgtctactgtatcttac 6049282  T
Q  596 agtgaaccaaaaacatctaacttgatat 623  Q
    | |||||||| ||||  |||||| ||||    
T  6049281 aatgaaccaacaacaattaacttaatat 6049254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 476 - 600
Target Start/End: Complemental strand, 9226191 - 9226067
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| | ||||| ||| |||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||     
T  9226191 tatggtggatcaaccttaaaagtggtccaccatagatcctattaattattttaatttaaattgtttgatcttttttattaaaagagaaccattaaatcac 9226092  T
Q  576 gcatgtctactgtatcttacagtga 600  Q
    ||||||||| | |||||||| ||||    
T  9226091 gcatgtctattttatcttacggtga 9226067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 338 - 470
Target Start/End: Original strand, 15743273 - 15743405
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| || |||||||||  ||| |||||||||||||| |||||| || ||||||||||||||||||| ||||||||| || ||||| ||||  |    
T  15743273 aggcttaataggttatttggtcctctaattaatttccaatttttattttggtctcataagtaataaaactcatgttttggtcccttgattgtatctccat 15743372  T
Q  438 cggtcaaataaatcattacccgttaaatttaac 470  Q
    | |||||||||||| || |||||||| ||||||    
T  15743373 cagtcaaataaatccttccccgttaagtttaac 15743405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 42244629 - 42244715
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaa 425  Q
    ||||||||| |||||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  42244629 ggcttaataggtcatttggtcctttaattaatttcaaattttcattttgatcccataattaataaaactcatgttttggtcccttaa 42244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 338 - 594
Target Start/End: Complemental strand, 46318736 - 46318477
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| |||||||||||| |||| ||||||| | |||| |||||  |||||||| |||||||| |||| ||||||||| | |||||| |||| ||    
T  46318736 aggcttaataggtcatttggtcctttaattaatttcaagttttgatttttgtcccataactaataaaagtcatgttttggtccctcaattgtatctccgt 46318637  T
Q  438 cggtcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatat 532  Q
    | |||||||||||| ||  | ||||| |||||||||||     |||| || |   ||  | |||||||||||||||| ||| | |||| ||||||||| |    
T  46318636 ctgtcaaataaatccttggctgttaagtttaaccccaaatgtctatgatgga-ttacttttagagtggtccaccatagatcctattaaatattttaattt 46318538  T
Q  533 aaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatctta 594  Q
    |||| |||||||||||||| || ||| || ||| |||||| || |||||||| | |||||||    
T  46318537 aaatcgtttgatcttttttttttaaa-agaaccattagattatacatgtctattttatctta 46318477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 492 - 629
Target Start/End: Original strand, 12665946 - 12666083
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatc 591  Q
    |||||||||||||||||| ||||| |||||| | ||||| ||||  ||||||||||||||| |||||||  |  ||||||||||| |||| || ||||||    
T  12665946 taagagtggtccaccatagatcttattaattttgttaatttaaaccgtttgatcttttttaataaaagataaatgttagatcatgtatgtttattgtatc 12666045  T
Q  592 ttacagtgaaccaaaaacatctaacttgatatcccatt 629  Q
    ||||| |||| ||| |||| ||||||| ||||| ||||    
T  12666046 ttacaatgaatcaacaacaactaacttcatatctcatt 12666083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 524 - 628
Target Start/End: Original strand, 8027420 - 8027524
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||    
T  8027420 ttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatat 8027519  T
Q  624 cccat 628  Q
    |||||    
T  8027520 cccat 8027524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 420
Target Start/End: Complemental strand, 7161474 - 7161396
Alignment:
Q  342 ttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||| |||||||| |||||||| ||||||| |||||| ||||||||| |||||||||||||| |||| |||||||||    
T  7161474 ttaataggtcatttgttcccttaattaatttcaaatttttattttgatctcataagtaataaaattcatgttttggtcc 7161396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 46468836 - 46468725
Alignment:
Q  340 gcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcg 439  Q
    |||||||| |||||||||| | |||| ||||||| |||||| |||||| |||||||| ||||||||||||| ||| ||||| | || | || ||||||      
T  46468836 gcttaataggtcatttggttctttaattaatttcaaatttttattttggtcccataactaataaaactcatgtttcggtccatcaagtttgcctctgttt 46468737  T
Q  440 gtcaaataaatc 451  Q
    ||||||||||||    
T  46468736 gtcaaataaatc 46468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 51042451 - 51042390
Alignment:
Q  348 agtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactca 409  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||    
T  51042451 agtcacttggtcccttaattaatttccaattttcattttggtcccacaattaataaaactca 51042390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 629
Target Start/End: Complemental strand, 45584967 - 45584827
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttg----atcttttttattaaaagagtaccgttagatcatgcatgtctactg 587  Q
    |||||||| ||||||||| ||| | |||||||||||||||||||| |||||    || |||||||||||| |   || | |||||||||  |||||| ||    
T  45584967 taagagtgctccaccatagatcctattaattattttaatataaatcgtttgatttattttttttattaaagggtaactgatagatcatg-ttgtctagtg 45584869  T
Q  588 tatcttacagtgaaccaaaaacatctaacttgatatcccatt 629  Q
    ||||||||  |||||||| |||||||||||| ||||| ||||    
T  45584868 tatcttactatgaaccaacaacatctaactttatatctcatt 45584827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 543
Target Start/End: Complemental strand, 13147392 - 13147325
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttga 543  Q
    ||||||| ||||||| ||| |||||||||||||| ||| | |||||||||||||| ||||||||||||    
T  13147392 tatggtggaccaaccttaatagtggtccaccatagatcctattaattattttaatttaaattgtttga 13147325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 46467142 - 46467225
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||||||||| |||| ||| ||| |||| ||||||| | ||||||||||| |||||||| ||||||||||||| ||| |||||    
T  46467142 aaggcttaataggtcaattgatcctttaattaatttcaagttttcattttggtcccataactaataaaactcatgtttcggtcc 46467225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Original strand, 48527690 - 48527749
Alignment:
Q  492 taagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    |||||||||||||||||| ||||| | |||||||||||| |||| |||||||||||||||    
T  48527690 taagagtggtccaccatagatcttatcaattattttaatttaaactgtttgatctttttt 48527749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 20064172 - 20064262
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaatt 427  Q
    |||||||||||  ||||||||||||| || ||||||||  ||||||||||| |||||||  ||||||||| ||  ||||||||||| ||||    
T  20064172 aaggcttaatagctcatttggtccctcaattaatttcccgttttcattttggtcccatatctaataaaacacacgttttggtccttcaatt 20064262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 586
Target Start/End: Original strand, 15232892 - 15233002
Alignment:
Q  475 atatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatca 574  Q
    |||| ||| ||||||  ||| ||||||||| |||| ||| | |||||||||||||||| ||  ||||||| |||||| ||||||||| ||| || ||| |    
T  15232892 atatagtggaccaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttgatatttttt-ttaaaagagaaccattggatta 15232990  T
Q  575 tgcatgtctact 586  Q
    ||||||||||||    
T  15232991 tgcatgtctact 15233002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 20069994 - 20069899
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggtcaaa 445  Q
    ||||||||||||| || ||||||||  ||||||||||| || ||||  ||||||||| ||| ||||||||||| |||| |  ||| ||||||||||    
T  20069994 tcatttggtccctcaattaatttcccgttttcattttggtctcatatctaataaaacacatgttttggtccttcaattataactccgtcggtcaaa 20069899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 42246007 - 42245924
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||||  ||||||  |||||||| ||||||| | |||| |||||| | |||||| ||||||||||||| |||||||||    
T  42246007 aaggcttaatagatcatttaatcccttaattaatttcaagtttttattttggttccataattaataaaactcatcttttggtcc 42245924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 530
Target Start/End: Complemental strand, 3617473 - 3617419
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaat 530  Q
    ||||||||||||||| |||||||||||||| ||| ||| | ||||||||||||||    
T  3617473 tatggtgaaccaaccttaagagtggtccactatagatcctattaattattttaat 3617419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 595
Target Start/End: Original strand, 49801765 - 49801875
Alignment:
Q  483 aaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtc 582  Q
    |||||||| ||| |||||||||||||||||  | |||||||||||||| ||||  ||||||| |||||| || |||| | ||| || ||||||||| |||    
T  49801765 aaccaaccttaaaagtggtccaccataaattctattaattattttaatttaaaccgtttgat-ttttttgtt-aaagggaaccattggatcatgcaggtc 49801862  T
Q  583 tactgtatcttac 595  Q
    || | ||||||||    
T  49801863 tattttatcttac 49801875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 552
Target Start/End: Complemental strand, 52078120 - 52078044
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttta 552  Q
    ||||||||||||||| |||||||| | ||||||| ||| | |||||||||||||| | ||  ||||||| |||||||    
T  52078120 tatggtgaaccaaccttaagagtgatacaccatagatcctattaattattttaattttaaccgtttgatttttttta 52078044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 551
Target Start/End: Original strand, 13894761 - 13894828
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    |||||||  |||||| ||| |||||| ||| |||||||||||||||| ||||  ||||||||||||||    
T  13894761 accaacctaaagagttgtctaccatagatcctgttaattattttaatttaaaccgtttgatctttttt 13894828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 530
Target Start/End: Complemental strand, 16965102 - 16965047
Alignment:
Q  475 atatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaat 530  Q
    |||||||| ||||||  |||||||||||||||||| ||| | ||||||||||||||    
T  16965102 atatggtggaccaactttaagagtggtccaccatagatcctattaattattttaat 16965047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 14479638 - 14479552
Alignment:
Q  334 ttaaaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||||||  | ||||||||||| |||||||||   | ||| ||||||| |||||||| |  ||||||||| ||||||||||    
T  14479638 ttaaaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtcc 14479552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 15071355 - 15071421
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| ||||||||||| | ||||||||||| || ||||| |||||||||  || |||||||||    
T  15071355 ttggtcccctaaataatttcaagttttcattttggtcacataattaataaaacgtatgttttggtcc 15071421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 24499758 - 24499692
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| ||||||||||| | ||||||||||| || || || ||||||||||||  |||||||||    
T  24499758 ttggtcccctaaataatttcaagttttcattttggtctcacaattaataaaactcacgttttggtcc 24499692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 561
Target Start/End: Original strand, 26802083 - 26802165
Alignment:
Q  479 ggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagag 561  Q
    |||||||||||| ||||||| |||||| ||| ||| | ||||| |||||||| ||||  |||||||  ||||| |||||||||    
T  26802083 ggtgaaccaaccttaagagttgtccactatagatcatattaatcattttaatttaaaccgtttgattattttttttaaaagag 26802165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 35943549 - 35943483
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcct 421  Q
    ||||| ||||||||||||| |||||| |||||| ||||| || |||||||||  | |||||||||||    
T  35943549 tggtctcttaaataatttcaaatttttattttggtcccacaattaataaaacgtacattttggtcct 35943483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 586
Target Start/End: Complemental strand, 44278307 - 44278245
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctact 586  Q
    ||||||| |||| | |||||||||||||||||||| |  | |||||||| |||||||||||||    
T  44278307 ttttaatttaaactatttgatcttttttattaaaacatgatcgttagattatgcatgtctact 44278245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 40634793 - 40634728
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||||| |||||||||| || ||| ||||||||||| |||| | |||||||||| ||||| ||||    
T  40634793 tggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacattttcgtcc 40634728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 44999438 - 44999385
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaa 529  Q
    ||||||| ||||| | |||||||||| ||||||| ||||| |||||||||||||    
T  44999438 tatggtggaccaatcgtaagagtggttcaccatagatcttattaattattttaa 44999385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 50444800 - 50444735
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| |||||||||| ||||||||||||  ||||| || |||||||||  | ||||||||||    
T  50444800 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgtacattttggtcc 50444735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 559
Target Start/End: Complemental strand, 15072766 - 15072682
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctt-ttttattaaaag 559  Q
    ||||||| |||||||  |||||||||||||| || |   | |||||| | ||||| |||||||||||||||| ||||||||||||    
T  15072766 tatggtggaccaacctaaagagtggtccaccgtagactctattaattttcttaatttaaattgtttgatctttttttattaaaag 15072682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 601
Target Start/End: Original strand, 46110421 - 46110548
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttatta--aaagagtaccgttagatc 573  Q
    ||||||| ||||||| ||||||||||||| | || | ||| |||||| | ||||| | ||  |||||||||||||| | |  |||| | |||||||||||    
T  46110421 tatggtggaccaaccttaagagtggtccatcgtagaccttattaattttgttaattttaaccgtttgatcttttttttaaagaaagtggaccgttagatc 46110520  T
Q  574 atgcatgtctactgtatcttacagtgaa 601  Q
    || || ||||| | |||||||| |||||    
T  46110521 atacaagtctattatatcttacggtgaa 46110548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 35904863 - 35904749
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctg 436  Q
    ||||||||||| ||||||| |||| |||||||||||| |||||||||||||  ||||||||||||||||||||| |||||||||||||||| |||||| |    
T  35904863 aaggcttaataggtcatttagtcctttaaataatttctaattttcattttggccccataagtaataaaactcatgttttggtcctttaattctgtctccg 35904764  T
Q  437 tcggtcaaataaatc 451  Q
    || |||||| |||||    
T  35904763 tcagtcaaaaaaatc 35904749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 478 - 623
Target Start/End: Original strand, 30748621 - 30748766
Alignment:
Q  478 tggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgc 577  Q
    |||||||| |||| |||||||||  ||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||| | |||||  ||||||    
T  30748621 tggtgaacaaaccttaagagtggcacaccatagatcatattaattattttaatttaaattgtttgatcttttttattaaaagaggatcgttaattcatgc 30748720  T
Q  578 atgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||| | |||||||  ||||| ||| |||||||||||| ||||    
T  30748721 atgtctagtatatcttatggtgaatcaacaacatctaactttatat 30748766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 517 - 618
Target Start/End: Complemental strand, 30749260 - 30749158
Alignment:
Q  517 ttaattattttaatataaattgtttgatctttttt-attaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaa 615  Q
    |||||||||||||| ||||  || ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  30749260 ttaattattttaatttaaaccgtatgatcttttttgattaaaagaggaccgttagatcatgcatgtctactgtatcttacggtgaaccaacaacatctaa 30749161  T
Q  616 ctt 618  Q
    |||    
T  30749160 ctt 30749158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 37956961 - 37957059
Alignment:
Q  353 tttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaatc 451  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||| |||| |||||||||| |||||    
T  37956961 tttggtcccttaattaatttcaaattttcattttggtcccataagtaataaaattcatgttttggtcccttaattgtctctccgtcggtcaaagaaatc 37957059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 34147133 - 34147215
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||| |||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||    
T  34147133 aggcttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtcc 34147215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 475
Target Start/End: Original strand, 35903506 - 35903642
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| |||||||||||| |||| ||||||| | ||||||||||| |||||||| |||||||| |||| ||||||||| | |||| | |||| |||    
T  35903506 ggcttaataggtcatttggtcctttaattaatttcaagttttcattttggtcccataactaataaaagtcatgttttggtccctcaattatatctccgtc 35903605  T
Q  439 ggtcaaataaatcattacccgttaaatttaaccccaa 475  Q
     |||||||||||| ||  | ||||| |||||||||||    
T  35903606 agtcaaataaatccttggctgttaagtttaaccccaa 35903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 628
Target Start/End: Complemental strand, 2384442 - 2384312
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || |||||||||||| |||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  2384442 tggtccactatagatcctattattttttttaatataaactgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 2384343  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  2384342 tgaaccaacaacatctagcattatatcccat 2384312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 333 - 558
Target Start/End: Original strand, 34512806 - 34513034
Alignment:
Q  333 tttaaaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtc 432  Q
    |||||| | |||||| || |||||||||| ||| ||||| ||| ||||||||||| |||||||| ||||||||||||| ||||| ||| | || | || |    
T  34512806 tttaaacgtttaataggttatttggtcccctaattaattaccagttttcattttggtcccataattaataaaactcatgttttgatccctcaaatttgcc 34512905  T
Q  433 tctgtcggtcaaataaatcattacccgttaaatttaacccca----atatggtgaaccaaccataagagtggtccaccataaatcttgttaattatttta 528  Q
    || ||  |||||||||||||| | | ||||| |||||||  |    |||||||| | |||||||||||||||||||||||| | ||| |||| | |||||    
T  34512906 tccgttagtcaaataaatcatga-ctgttaagtttaaccttaatgtatatggtggatcaaccataagagtggtccaccatataccttattaaatttttta 34513004  T
Q  529 atataaattgtttgatcttttttattaaaa 558  Q
    || |||| | |||||| | |||| ||||||    
T  34513005 atttaaactatttgatttgtttttttaaaa 34513034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 2276278 - 2276360
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||| |||||||||||||| ||||||||| || ||||||||||  ||| |||||||||||||||||| |||||||||    
T  2276278 aggcttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtcc 2276360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 479 - 593
Target Start/End: Complemental strand, 6030442 - 6030328
Alignment:
Q  479 ggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgca 578  Q
    |||| ||||||| |||||||| || |||||| ||| | |||||  ||||||| ||||  |||||||||||||||||||||||  | ||||| ||||||||    
T  6030442 ggtggaccaaccttaagagtgatctaccatagatcctattaatatttttaatttaaaccgtttgatcttttttattaaaagatgaacgttatatcatgca 6030343  T
Q  579 tgtctactgtatctt 593  Q
    |||||||||||||||    
T  6030342 tgtctactgtatctt 6030328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 2277574 - 2277506
Alignment:
Q  352 atttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||    
T  2277574 atttggtccctcaaataatttccagttttcattttggtcccataagtaataaaacttatgttttggtcc 2277506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 420
Target Start/End: Complemental strand, 34148479 - 34148397
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||| |||||||||||||| ||||||||| || ||||||||||  | |||||| ||||||||||||| |||||||||    
T  34148479 aggcttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtcc 34148397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 476 - 574
Target Start/End: Complemental strand, 42641836 - 42641738
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatca 574  Q
    |||||||  |||||| ||||||||||| |||||| ||| | |||||||||||||| |||| ||||||||||||||| ||||||||| | |||| |||||    
T  42641836 tatggtgggccaaccttaagagtggtctaccatagatcctattaattattttaatttaaactgtttgatctttttttttaaaagagaatcgttggatca 42641738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 34513672 - 34513591
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtc 419  Q
    |||||||||| ||||||||||||| ||| ||||| ||||||||||||||| | |||||| ||||||||||||| ||| ||||    
T  34513672 aggcttaataggtcatttggtcccctaattaattaccaattttcattttggttccataattaataaaactcatgtttaggtc 34513591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 337 - 425
Target Start/End: Complemental strand, 30749413 - 30749325
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaa 425  Q
    |||||||||||||||||||| |  | ||| ||||||||| ||||||||||  |||||||| ||||||||||||| ||||||||| ||||    
T  30749413 aaggcttaataagtcatttgatttcctaattaatttccagttttcattttagtcccataattaataaaactcatgttttggtcccttaa 30749325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 451
Target Start/End: Original strand, 33995948 - 33996057
Alignment:
Q  341 cttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcgg 440  Q
    ||||||| ||||||||||||||||| ||||||  | ||||||||||  ||| |||| ||||||||||||| |||| |||| |||||| |  ||| |||||    
T  33995948 cttaataggtcatttggtcccttaattaattttaagttttcatttttgtcc-ataactaataaaactcatgttttagtcccttaattttccctccgtcgg 33996046  T
Q  441 tcaaataaatc 451  Q
    |||||||||||    
T  33996047 tcaaataaatc 33996057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 524 - 614
Target Start/End: Complemental strand, 36215099 - 36215009
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatcta 614  Q
    ||||||||||||  ||||||||||||||| |||   || |  ||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  36215099 ttttaatataaaccgtttgatcttttttaataatgaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatcta 36215009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 40323095 - 40323225
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  |||||||||||||||||  ||||||||||| |    
T  40323095 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtcggctgtatcttactg 40323194  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| ||||| || | | |||||||||    
T  40323195 tgaaccaacaacatatagcattatatcccat 40323225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 7753640 - 7753532
Alignment:
Q  342 ttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggt 441  Q
    |||||| ||||||||||||| ||| ||||||| ||||||||||||| | |||||| |||| |||||||| |||| |||| |||||||| ||   ||||||    
T  7753640 ttaataggtcatttggtcccctaattaatttcaaattttcattttggt-ccataattaattaaactcatgtttttgtcccttaattgtctcctcgtcggt 7753542  T
Q  442 caaataaatc 451  Q
    | ||||||||    
T  7753541 ctaataaatc 7753532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 428
Target Start/End: Complemental strand, 35061435 - 35061345
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattg 428  Q
    ||||||||||| ||||||||||||||||| ||||||  | ||||||||||| | |||||| ||||||||||||  |||| |||| |||||||    
T  35061435 aaggcttaataggtcatttggtcccttaattaatttgaagttttcattttggt-ccataactaataaaactcacgttttagtcccttaattg 35061345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 11317470 - 11317405
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||| |||||||||| ||||||||||||| ||||| || |||||||||  ||||||||||||    
T  11317470 tggtccctcaaataatttcaaattttcattttggtcccacaattaataaaacatatattttggtcc 11317405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 9474171 - 9474103
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||| ||||||||||||| ||| |||||| |||||||||||||| ||| |||| |||| ||||    
T  9474171 aggcttaataggtcatttggtcccctaattaattttcaattttcattttgttcctataaataatgaaac 9474103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 28562911 - 28562860
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||| |||||||||| ||||||||||||| |||||||| |||||||||    
T  28562911 tggtccctcaaataatttcaaattttcattttggtcccataattaataaaac 28562860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 35061268 - 35061339
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactca 409  Q
    |||||||||| |||||||  |||| ||| |||||| || ||||||||||| |||||||| ||||||||||||    
T  35061268 aggcttaataggtcatttaatcccctaattaattttcagttttcattttggtcccataactaataaaactca 35061339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 551
Target Start/End: Original strand, 34467657 - 34467721
Alignment:
Q  487 aaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    |||| |||||||||||||||||||| ||| |||| | ||||||| |||| |||||||| ||||||    
T  34467657 aaccttaagagtggtccaccataaaccttattaagttttttaatttaaactgtttgatatttttt 34467721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 551
Target Start/End: Complemental strand, 11317335 - 11317268
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||| ||||||||||| |||||| ||| | |||||||||||||| ||||| ||||| || |||||    
T  11317335 accaaccttaagagtggtctaccatagatcctattaattattttaatttaaatcgtttggtcattttt 11317268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 32469162 - 32469213
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||| |||||||||| | ||||||||||||||||| || |||||||||    
T  32469162 tggtccctcaaataatttcaagttttcattttgatcccacaattaataaaac 32469213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 37956915 - 37956978
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaat 401  Q
    |||||||||| ||||||||||| ||||| ||||||| |||||| |||||| |||| ||| ||||    
T  37956915 aggcttaataggtcatttggtctcttaattaatttcaaatttttattttggtcccttaattaat 37956978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 43033229 - 43033280
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaa 535  Q
    ||||||| |||||||||||||||||||| | | |||||||||||||| ||||    
T  43033229 accaaccttaagagtggtccaccataaaccctattaattattttaatttaaa 43033280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 594
Target Start/End: Complemental strand, 16290742 - 16290652
Alignment:
Q  504 accataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatctta 594  Q
    |||||| ||| | |||||||||||||| ||||| |||| |||||||||||||||  |  ||  || ||||||||||||||| | |||||||    
T  16290742 accatagatcctattaattattttaatttaaatcgtttaatcttttttattaaaccatgacatttggatcatgcatgtctattttatctta 16290652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 561
Target Start/End: Original strand, 8320897 - 8320982
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagag 561  Q
    ||||||| |||| || |||||| ||||||||||| ||  | |||||||||||||| ||||  |||||||  ||||| |||||||||    
T  8320897 tatggtggaccatccttaagagcggtccaccatagattatattaattattttaatttaaaccgtttgattgttttttttaaaagag 8320982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 11547672 - 11547733
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatatttt 415  Q
    ||||||| |||||||||||| | ||||||||||| || ||||| ||||||||| ||| ||||    
T  11547672 ttggtcctttaaataatttcaagttttcattttggtctcataattaataaaacacatgtttt 11547733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 7437854 - 7437798
Alignment:
Q  364 aaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||| | ||||||||||| ||||| || |||||||||  ||||||||||||    
T  7437854 aaataatttcaagttttcattttggtcccacaattaataaaacgtatattttggtcc 7437798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 11315946 - 11315998
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||| ||||||||||| | ||||||||||| ||||| || |||||||||    
T  11315946 ttggtcccctaaataatttcaagttttcattttggtcccacaattaataaaac 11315998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 584
Target Start/End: Original strand, 21664979 - 21665051
Alignment:
Q  513 cttgttaattattttaatataaattgtttgatcttttttatt-aaaagagtaccgttagatcatgcatgtcta 584  Q
    ||||||||||  |||| | |||||||||||||||||||| || |||| |  ||| ||||||||||||||||||    
T  21664979 cttgttaatttgtttagtttaaattgtttgatctttttttttgaaaatataaccattagatcatgcatgtcta 21665051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 30748488 - 30748532
Alignment:
Q  367 taatttccaattttcattttgatcccataagtaataaaactcata 411  Q
    |||||||||||||| ||||| ||| ||||| ||||||||||||||    
T  30748488 taatttccaatttttattttaatctcataattaataaaactcata 30748532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 32469289 - 32469349
Alignment:
Q  475 atatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaa 535  Q
    |||||||| ||||||  |||||||||||||| ||| ||| | |||||||||||||| ||||    
T  32469289 atatggtggaccaactttaagagtggtccactatagatcctattaattattttaatttaaa 32469349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 43033099 - 43033147
Alignment:
Q  358 tcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||| | ||||||||||| ||||| || |||||||||    
T  43033099 tcccttaaataatttcaagttttcattttggtcccacaattaataaaac 43033147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 339 - 451
Target Start/End: Complemental strand, 799 - 687
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| ||||||||||||  ||| ||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| | || | ||||||||||    
T  799 ggcttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtccctcaagtttgtctctgtc 700  T
Q  439 ggtcaaataaatc 451  Q
    |||||||||||||    
T  699 ggtcaaataaatc 687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 560
Target Start/End: Complemental strand, 649 - 573
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaaga 560  Q
    ||||||| |||||||||||||||||| | ||| |||| | ||||||| ||||  ||||||||| |||| | ||||||    
T  649 accaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatctgttttttaaaaaga 573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 338 - 420
Target Start/End: Complemental strand, 1204 - 1122
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  1204 aggcttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtcc 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 341 - 526
Target Start/End: Original strand, 8521255 - 8521444
Alignment:
Q  341 cttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcgg 440  Q
    ||||||| ||||||||||||||||| ||||||| | ||||||||||| |||||||| ||||||||||||| ||||||||| | |  | |||||| ||| |    
T  8521255 cttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgtcag 8521354  T
Q  441 tcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattt 526  Q
    |||||||||||   | | ||||| |||||||||||     ||||||| ||||||| ||||| |||||||||||| ||| | ||||||||||    
T  8521355 tcaaataaatcccga-cggttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 8521444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 338 - 526
Target Start/End: Complemental strand, 1010483 - 1010291
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| ||||||||||||||||| ||||||| | |||| |||||| |||||||| ||||||||||||| ||||||||| | |  | |||||| ||    
T  1010483 aggcttaataggtcatttggtcccttaattaatttcaagtttttattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgt 1010384  T
Q  438 cggtcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattt 526  Q
    | ||||||||||||   | | ||||| |||||||||||     ||||||| ||||||| |||||||||||| ||||| ||| | ||||||||||    
T  1010383 cagtcaaataaatcccga-cggttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccatagatcctattaattattt 1010291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 339 - 451
Target Start/End: Original strand, 9169584 - 9169697
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactc-atattttggtcctttaattgtgtctctgt 437  Q
    ||||||||| ||||||||| ||||||| ||||||| | ||||||||||  |||||||| ||||||||||| || |||||||| ||||||||| |||| ||    
T  9169584 ggcttaataggtcatttggccccttaattaatttcaagttttcattttagtcccataattaataaaactctatgttttggtcttttaattgtctctccgt 9169683  T
Q  438 cggtcaaataaatc 451  Q
    ||||||||||||||    
T  9169684 cggtcaaataaatc 9169697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 32757821 - 32757904
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    |||| |||||| |||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||    
T  32757821 aaggtttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcatgttttggtcc 32757904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 8523866 - 8523752
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctg 436  Q
    ||||||||||| ||||||||||||| ||| ||||||| | ||||||||||| |||||||| ||||||||||||| ||||| ||||| |  | |||||| |    
T  8523866 aaggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactcatgttttgatccttcatgtttgtctccg 8523767  T
Q  437 tcggtcaaataaatc 451  Q
    || ||||||||||||    
T  8523766 tcagtcaaataaatc 8523752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 524 - 628
Target Start/End: Original strand, 27262606 - 27262710
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||    
T  27262606 ttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatat 27262705  T
Q  624 cccat 628  Q
    |||||    
T  27262706 cccat 27262710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 613
Target Start/End: Original strand, 31171014 - 31171129
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  31171014 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 31171113  T
Q  598 tgaaccaaaaacatct 613  Q
    |||||||| |||||||    
T  31171114 tgaaccaacaacatct 31171129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 32759168 - 32759085
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||||||||| |||||||||||||| ||||||||| || ||||||||||  | |||||| ||||||||||||| |||||||||    
T  32759168 aaggcttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtcc 32759085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 28393375 - 28393505
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| ||||||||||||      
T  28393375 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactc 28393474  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  28393475 tgaaccaacaacatctagcattatatcccat 28393505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 476 - 600
Target Start/End: Complemental strand, 27705291 - 27705168
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| ||||||| ||| |||||||||||||| ||| | |||||  ||||||| ||||  ||||||| |||||||||||||||  | ||||||||| |    
T  27705291 tatggtggaccaaccttaaaagtggtccaccatagatcctattaatatttttaatttaaaccgtttgatattttttattaaaagatgatcgttagatc-t 27705193  T
Q  576 gcatgtctactgtatcttacagtga 600  Q
    |||||||||||  ||||| ||||||    
T  27705192 gcatgtctactacatcttccagtga 27705168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 551
Target Start/End: Original strand, 1102766 - 1102833
Alignment:
Q  484 accaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||| ||||  ||||||||||||||    
T  1102766 accaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgatctttttt 1102833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 524 - 614
Target Start/End: Original strand, 41874167 - 41874257
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatcta 614  Q
    ||||||||||||  ||||||||||||||| ||||  || |  |||||||||||||| || |||||||||||| ||||||||| ||||||||    
T  41874167 ttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatatccactgtatcttactgtgaaccaacaacatcta 41874257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 451
Target Start/End: Original strand, 1009182 - 1009294
Alignment:
Q  339 ggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtc 438  Q
    ||||||||| |||||||||| || ||| ||||||| | ||||||||||| | |||||| ||||||||||||| ||||||| ||| |  | ||||||  ||    
T  1009182 ggcttaataggtcatttggttccctaattaatttcaagttttcattttggttccataactaataaaactcatgttttggttcttcatgtttgtctccatc 1009281  T
Q  439 ggtcaaataaatc 451  Q
     ||||||||||||    
T  1009282 agtcaaataaatc 1009294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 10978398 - 10978330
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||||  |||||||||||| ||| ||||||||||||||||||||| ||| |||| |||||||||    
T  10978398 aggcttaatagatcatttggtcccctaattaatttccaattttcattttggtcctataaataataaaac 10978330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 24503197 - 24503249
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  24503197 ttggtcccttaattaattaccaattttcattttggtcccataagtaataaaac 24503249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 24509138 - 24509087
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  24509138 tggtcccttaattaattaccaattttcattttggtcccataagtaataaaac 24509087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 20538049 - 20538117
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    ||||||||||| ||  ||||||||| ||| ||||||| ||||||||||||| |||||||| ||||||||    
T  20538049 aaggcttaataggttttttggtcccctaattaatttcaaattttcattttggtcccataattaataaaa 20538117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 434
Target Start/End: Complemental strand, 34899054 - 34898974
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctc 434  Q
    |||||||||||| |||||| || ||||||||||| |||||||||||||||||   | |||||||||| ||| || ||||||    
T  34899054 ttggtcccttaattaattttcatttttcattttggtcccataagtaataaaaagtacattttggtcccttagttttgtctc 34898974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 11262533 - 11262608
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||| ||||||| |||||||||||||||||| ||| | ||||||||| |||| ||||   |||||||||||||    
T  11262533 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattataatttaaaccatttgatctttttt 11262608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 22047874 - 22047949
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    ||||||| | ||||| |||||||||||||||||||||| | | |||||||||||| ||||  ||||||| ||||||    
T  22047874 tatggtggatcaaccttaagagtggtccaccataaatcctatgaattattttaatttaaaccgtttgatttttttt 22047949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 26047814 - 26047901
Alignment:
Q  342 ttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgt 429  Q
    |||||| ||||||||||||  ||| ||||||| |||||| |||||| || ||||| ||||||||||||| |||| |||| | ||||||    
T  26047814 ttaataggtcatttggtcctctaattaatttcaaatttttattttggtctcataactaataaaactcatgttttagtccctcaattgt 26047901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 34894162 - 34894213
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    |||||||||||| ||||||||| ||||||||||| |||| ||||||||||||    
T  34894162 ttggtcccttaattaatttccatttttcattttggtcccgtaagtaataaaa 34894213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 10977018 - 10977087
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||||| |||||||| |||| ||| |||||| |||||||||| ||| ||| |||| |||||||||    
T  10977018 aaggcttaataggtcatttgatcccctaattaatttgcaattttcatcttggtcctataactaataaaac 10977087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 11796559 - 11796648
Alignment:
Q  331 attttaaaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcc 420  Q
    ||||| ||||||||||  | ||||||||||| |||||||||   | ||| ||||||| |||||||| |  ||||||||||||||||||||    
T  11796559 atttttaaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtcc 11796648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 561
Target Start/End: Complemental strand, 30859146 - 30859061
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagag 561  Q
    ||||||| ||||| | |||||||||||||||||| ||| | |||||||||||||| ||||  ||||||| || ||| | |||||||    
T  30859146 tatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgattttctttttaaaaagag 30859061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 530
Target Start/End: Original strand, 30910885 - 30910937
Alignment:
Q  478 tggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaat 530  Q
    ||||| ||||||| |||||||||||||||||| ||| | ||||||||||||||    
T  30910885 tggtggaccaaccttaagagtggtccaccatagatcctattaattattttaat 30910937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 551
Target Start/End: Original strand, 39603870 - 39604070
Alignment:
Q  358 tcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaatcattacc 457  Q
    ||||| |||||||||| | ||||||||||||||||| || |||||||||  |  ||||||||| | || | |  ||| ||  | |||||||||||| ||     
T  39603870 tccctcaaataatttcaagttttcattttgatcccacaattaataaaacgtacgttttggtccctcaaattttcctccgtttgccaaataaatcatgact 39603969  T
Q  458 cgttaaatttaaccccaa--------tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttt 549  Q
     ||||| |||||||||||        ||||||  ||||||| ||| |||| ||||||||| ||| | |||||||||||||| |||| |||||||| ||||    
T  39603970 -gttaagtttaaccccaaatgatgtctatggtagaccaaccttaaaagtgatccaccatagatcctattaattattttaatttaaactgtttgatttttt 39604068  T
Q  550 tt 551  Q
    ||    
T  39604069 tt 39604070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Complemental strand, 9220416 - 9220365
Alignment:
Q  493 aagagtggtccaccataaatcttgttaattattttaatataaattgtttgat 544  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||  |||||||    
T  9220416 aagagtggtcccccataaatcttattaattattttaatttaaaccgtttgat 9220365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 629
Target Start/End: Original strand, 223411 - 223517
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaag-agtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgata 622  Q
    ||||||| ||||  ||||||||||||||||| |||| || ||| || ||| |  |||||||| | |||||||| ||||  ||| |||||||||||| |||    
T  223411 ttttaatttaaaccgtttgatcttttttatttaaagtagaacctttggattactcatgtctattttatcttacggtgagtcaacaacatctaactttata 223510  T
Q  623 tcccatt 629  Q
    |||||||    
T  223511 tcccatt 223517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 526
Target Start/End: Original strand, 1009325 - 1009375
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattt 526  Q
    ||||||| ||||||| |||||||||||||||||| ||| | ||||||||||    
T  1009325 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattt 1009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 22049236 - 22049187
Alignment:
Q  357 gtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||| ||||||||||| | ||||||||||| |||||||| |||||||||    
T  22049236 gtcccctaaataatttcaagttttcattttggtcccataattaataaaac 22049187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 22308903 - 22308850
Alignment:
Q  353 tttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||||||| |||||||||||   ||||||||||| |||||||| |||||||||    
T  22308903 tttggtcccctaaataatttcatgttttcattttggtcccataattaataaaac 22308850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 476 - 624
Target Start/End: Original strand, 32710 - 32862
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattatttt--aatataaattgtttgatctttt--ttattaaaagagtaccgttaga 571  Q
    ||||||| ||||||| || |||||||||| |||| ||| | ||| || ||||  ||| ||||  ||||||||||||  |||||||||||| ||| |||||    
T  32710 tatggtggaccaaccttaggagtggtccatcatagatcctattattttttttttaatttaaaccgtttgatcttttttttattaaaagaggaccattaga 32809  T
Q  572 tcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatatc 624  Q
    |||||||||||||||||||||||| || |||||| |||||||||||| |||||    
T  32810 tcatgcatgtctactgtatcttacggtaaaccaacaacatctaactttatatc 32862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 338 - 535
Target Start/End: Original strand, 127430 - 127632
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| ||||||||||||| ||| ||||||| | ||||| ||||| |||||||| ||||||||||||| ||||||||| | |  | || ||| ||    
T  127430 aggcttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccctcatgtttgcctccgt 127529  T
Q  438 cggtcaaataaatcattacccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatat 532  Q
    ||||||||||||||  |  | ||||| ||||||| |||     ||||||||| ||||| |||||||||||||||||| ||| | |||||  ||||||| |    
T  127530 cggtcaaataaatccctgacagttaactttaacctcaaatgtctatggtgaaacaaccttaagagtggtccaccatagatcctattaatgtttttaattt 127629  T
Q  533 aaa 535  Q
    |||    
T  127630 aaa 127632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 338 - 451
Target Start/End: Complemental strand, 128710 - 128597
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgt 437  Q
    |||||||||| ||||||||||||||||| ||||||  | ||||||||||| ||| || | ||||||||||||| ||||||||| |||| | |||||| ||    
T  128710 aggcttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtcccttaaatttgtctccgt 128611  T
Q  438 cggtcaaataaatc 451  Q
    |||||||| |||||    
T  128610 cggtcaaaaaaatc 128597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 476 - 627
Target Start/End: Original strand, 12669863 - 12670015
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatc-ttttttattaaaagagtaccgttagatca 574  Q
    ||||||| ||||||| |||||||||||||||||| ||| | ||| || | |||||||||| | ||||||| |||||||||||| ||| ||  ||||||||    
T  12669863 tatggtggaccaaccttaagagtggtccaccatagatcatattatttttattaatataaactatttgatctttttttattaaaggaggactattagatca 12669962  T
Q  575 tgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatatccca 627  Q
    |||||||||||| |||||||   |||||||| | |||||||| | ||||||||    
T  12669963 tgcatgtctactatatcttaatctgaaccaacatcatctaacattatatccca 12670015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 16208533 - 16208633
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaa 449  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||||  |||||||| |||| |||||||||||||| |||||||  ||| |||||| |||    
T  16208533 tcatttggtcccttaaataattttcaatttttattttggtcccatatctaataaaagtcatgttttggtcctttaactgtgtcttagtctgtcaaaaaaa 16208632  T
Q  450 t 450  Q
    |    
T  16208633 t 16208633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 476 - 550
Target Start/End: Complemental strand, 7311700 - 7311626
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttt 550  Q
    ||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||  ||||||| |||||    
T  7311700 tatggtgaaccaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttgattttttt 7311626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 7308566 - 7308494
Alignment:
Q  338 aggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcat 410  Q
    |||||||||| ||||||||| ||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||    
T  7308566 aggcttaataggtcatttggccccttaattaatttcaagttttcattttggtcctataagtaataaaactcat 7308494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 524 - 628
Target Start/End: Complemental strand, 13847850 - 13847746
Alignment:
Q  524 ttttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaaaaacatctaacttgatat 623  Q
    ||||||||||||  ||||||||||||||| ||||  || |   |||||||||||||||| |||||||||||| ||||||||| |||||||| | | ||||    
T  13847850 ttttaatataaaccgtttgatcttttttaataaagaaggatttttagatcatgcatgtccactgtatcttactgtgaaccaacaacatctagcattatat 13847751  T
Q  624 cccat 628  Q
    |||||    
T  13847750 cccat 13847746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 551
Target Start/End: Complemental strand, 18346722 - 18346650
Alignment:
Q  479 ggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttt 551  Q
    |||||||||||| |||||||||||||| ||||||| | |||||||||||||| ||||  ||||||| ||||||    
T  18346722 ggtgaaccaaccttaagagtggtccactataaatcctattaattattttaatttaaaccgtttgatttttttt 18346650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 232189 - 232241
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  232189 ttggtcccttaaataatttcaatttttcattttggtcccataattaataaaac 232241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 233684 - 233616
Alignment:
Q  337 aaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    |||||||||||  ||| ||||||| |||||||||||| | ||||||||||| |||||||| ||||||||    
T  233684 aaggcttaatagatcaattggtcctttaaataatttcaatttttcattttggtcccataattaataaaa 233616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 610
Target Start/End: Original strand, 23392365 - 23392490
Alignment:
Q  486 caaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgat-cttttttattaaaagagtaccgttagatcatgcatgtcta 584  Q
    ||||| ||| |||||||||||||| ||| | |||||||||||||| | ||  |||||||  |||||| ||||||||  ||| |||||| ||||| |||||    
T  23392365 caaccttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgatattttttttttaaaagataaccattagattatgcaagtcta 23392464  T
Q  585 ctgtatcttacagtgaaccaaaaaca 610  Q
     | |||||||| || |||||| ||||    
T  23392465 ttttatcttactgtaaaccaacaaca 23392490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 6452614 - 6452562
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||| ||||||||||| | ||||||||||| |||||||| |||||||||    
T  6452614 ttggtcccctaaataatttcaagttttcattttggtcccataattaataaaac 6452562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 29722672 - 29722727
Alignment:
Q  350 tcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    |||||||||||||||  |||||||   |||||||||||||||||||| ||||||||    
T  29722672 tcatttggtcccttatttaatttcatgttttcattttgatcccataattaataaaa 29722727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 18346872 - 18346802
Alignment:
Q  335 taaaggcttaataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    |||||||||| ||  |||||||||||||||  |||||||  |||||||||||| ||||| || ||||||||    
T  18346872 taaaggcttattagatcatttggtcccttatttaatttcatattttcattttggtcccacaattaataaaa 18346802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 7311826 - 7311777
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaa 404  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||    
T  7311826 tggtcccttaaataattttaagttttcattttgatcccacaattaataaa 7311777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 424
Target Start/End: Original strand, 12780529 - 12780610
Alignment:
Q  343 taataagtcatttggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtccttta 424  Q
    |||||||| ||||| |||||||| ||||||  | |||| || |||||||||||| |||||||| |||| |||| ||| ||||    
T  12780529 taataagttatttgatcccttaattaatttttagtttttatgttgatcccataattaataaaattcatgttttagtcattta 12780610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 29381834 - 29381782
Alignment:
Q  353 tttggtcccttaaataatttccaattttcattttgatcccataagtaataaaa 405  Q
    ||||||||||||  |||||||  |||||||||||||||||| || ||||||||    
T  29381834 tttggtcccttatttaatttcttattttcattttgatcccacaattaataaaa 29381782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 498 - 628
Target Start/End: Complemental strand, 83175 - 83045
Alignment:
Q  498 tggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcatgcatgtctactgtatcttacag 597  Q
    |||||||| ||| ||| | ||| || ||||||||||||  ||||||||||||||| ||||  || |  ||||||||||||||||| |||||||||||| |    
T  83175 tggtccactatagatcctattattttttttaatataaaccgtttgatcttttttaataaagaaggattgttagatcatgcatgtccactgtatcttactg 83076  T
Q  598 tgaaccaaaaacatctaacttgatatcccat 628  Q
    |||||||| |||||||| | | |||||||||    
T  83075 tgaaccaacaacatctagcattatatcccat 83045  T

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Target: scaffold0031 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 605
Target Start/End: Original strand, 123983 - 124236
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaactcatattttggtcctttaattgtgtctctgtcggtcaaataaatcatt 454  Q
    |||||| | |||||||||| | ||||||||||| ||||| || |||||||||  | |||||||||| | | || |  ||||||  | |||||||||| ||    
T  123983 tggtccttcaaataatttcaagttttcattttggtcccacaattaataaaacgtacattttggtccctcactttttcctctgtttgccaaataaatcctt 124082  T
Q  455 acccgttaaatttaaccccaa-----tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttt 549  Q
    ||  ||||| |||||||||||     ||||||| ||||||| |||||||||||||||||| ||| | |||| | | ||||| ||||| ||||||||| ||    
T  124083 acg-gttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtccaccatagatcgtattaaat-tgttaatttaaatcgtttgatctatt 124180  T
Q  550 ttattaaaagagtaccgttagatcatgcatgtctactgtatcttacagtgaaccaa 605  Q
    || | ||||||  ||| |  ||| ||||||||||| |||| ||||||||| |||||    
T  124181 ttttaaaaagataaccataggattatgcatgtctattgtaacttacagtgtaccaa 124236  T

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Target: scaffold0031; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 125335 - 125284
Alignment:
Q  355 tggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    |||||||| |||||||||| ||||||||||||| ||||| || |||||||||    
T  125335 tggtccctcaaataatttcaaattttcattttggtcccacaattaataaaac 125284  T

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Target: scaffold0077 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 552
Target Start/End: Complemental strand, 54159 - 54083
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttta 552  Q
    ||||||| ||||||| ||| |||||||||||||| ||| | |||||||||||||| |||| |||||||| |||||||    
T  54159 tatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgatttttttta 54083  T

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Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 552
Target Start/End: Complemental strand, 43549 - 43473
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatctttttta 552  Q
    ||||||| ||||| | |||||||||||||||||| ||| | |||||||||||||| ||||  ||||||| |||||||    
T  43549 tatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttttttta 43473  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 584
Target Start/End: Complemental strand, 8166 - 8059
Alignment:
Q  476 tatggtgaaccaaccataagagtggtccaccataaatcttgttaattattttaatataaattgtttgatcttttttattaaaagagtaccgttagatcat 575  Q
    ||||||| | ||||| |||||| |||||| |||| ||  | |||||||||||||| ||||  |||||||  ||||| ||||||||| ||| || ||||||    
T  8166 tatggtggatcaaccttaagag-ggtccatcatagattatattaattattttaatttaaaccgtttgattgttttttttaaaagaggaccatttgatcat 8068  T
Q  576 gcatgtcta 584  Q
    ||| |||||    
T  8067 gcaagtcta 8059  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 108526 - 108578
Alignment:
Q  354 ttggtcccttaaataatttccaattttcattttgatcccataagtaataaaac 406  Q
    ||||| || ||| ||||||||| ||| |||||||||||||||| |||||||||    
T  108526 ttggttccctaattaatttccattttacattttgatcccataattaataaaac 108578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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