View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1610R-Insertion-13 (Length: 681)

Name: NF1610R-Insertion-13
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1610R-Insertion-13
NF1610R-Insertion-13
[»] chr2 (4 HSPs)
chr2 (51-681)||(19376525-19377159)
chr2 (631-680)||(24122237-24122286)
chr2 (630-673)||(19379097-19379140)
chr2 (637-681)||(44289952-44289996)
[»] chr7 (5 HSPs)
chr7 (631-674)||(20009088-20009131)
chr7 (632-674)||(20123277-20123319)
chr7 (631-674)||(20008245-20008288)
chr7 (631-674)||(29525112-29525155)
chr7 (628-670)||(20122581-20122623)
[»] chr6 (3 HSPs)
chr6 (631-674)||(25344851-25344894)
chr6 (631-674)||(25345606-25345649)
chr6 (632-678)||(21761969-21762015)
[»] chr5 (9 HSPs)
chr5 (631-674)||(10555384-10555427)
chr5 (631-674)||(23237046-23237089)
chr5 (631-674)||(23244359-23244402)
chr5 (631-674)||(33766490-33766533)
chr5 (631-674)||(42994482-42994525)
chr5 (630-678)||(21182908-21182956)
chr5 (631-674)||(10556250-10556293)
chr5 (631-674)||(33767342-33767385)
chr5 (631-675)||(27100382-27100426)
[»] chr4 (4 HSPs)
chr4 (627-674)||(24195583-24195630)
chr4 (630-674)||(21436263-21436307)
chr4 (631-678)||(11310711-11310758)
chr4 (631-678)||(38977510-38977557)
[»] scaffold0548 (1 HSPs)
scaffold0548 (631-678)||(7644-7691)
[»] chr8 (2 HSPs)
chr8 (631-674)||(18684312-18684355)
chr8 (631-674)||(18729877-18729920)
[»] chr3 (5 HSPs)
chr3 (631-674)||(263536-263579)
chr3 (631-674)||(264401-264444)
chr3 (631-678)||(46914063-46914110)
chr3 (631-675)||(33639653-33639697)
chr3 (627-675)||(52341337-52341385)
[»] chr1 (1 HSPs)
chr1 (631-675)||(19990281-19990325)


Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 51 - 681
Target Start/End: Original strand, 19376525 - 19377159
Alignment:
Q  51 ttgttaaagaatattctaatgacactcgttagcattttcttataataattatcatagccatatcacttttataagactcgtaacaccttcatcacatcca 150  Q
    ||||||||||||||||||| ||||||| |||||||||  ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19376525 ttgttaaagaatattctaacgacactccttagcatttctttaaaataattatcatagccatatcatttttataagactcgtaacaccttcatcacatcca 19376624  T
Q  151 agactcaacatttaaagtgtaacccgagtaattcaattttaaagatcgtatagcaagtaatctaagaagattttaatattattttaatatttgtagttaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19376625 agactcaacatttaaagtgtaacccgagtaattcaattttaaagatcgtatagcaagtaatctaagaagattttaatattattttaaaatttgtagttaa 19376724  T
Q  251 ataacccaaccataaaaaacctaccagagnnnnnnngtcattggtctcataactcatatctagctaatatcaatatgggagcatttgtactcacaatagc 350  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19376725 ataacccaaccataaaaaacctaccagagaaaaaaagtcattggtctcataactcatatctagctaatatcaatacgggagcatttgtactcacaatagc 19376824  T
Q  351 aacaagtctccattgaagtccccattgaagtgtcggtcaacaactcata----nnnnnnnnnnaagaacaactcatatttaaagttattaaattgtgtac 446  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  19376825 aacaagtctcaattgaagtccccattgaagtgtcggtcaacaactcatattttttttttttgaaagaacaactcatatttaaagttattaaattgtgtac 19376924  T
Q  447 ctacacttccagtttaaattacaaaaatacttccggagttaattaattttgtaaaagaaaaaacaatattattttttattaattctttggttcatattga 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19376925 ctacacttccagtttaaattacaaaaatacttccggagttaattaattttgtaaaagaaaaaacaatattattttttattaattctttggttcatattga 19377024  T
Q  547 atacgatcattaaatattgtatcaaaaccccaccnnnnnnnnntattgtattacaatattttttaatatattgcataaatgagagatatattgactccaa 646  Q
    ||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19377025 atacgatcattaaatattgtatcaaaaccccaccaaaaaaaaatattgtattaaaatattttttaatatattgcatagatgagagatatattgactccaa 19377124  T
Q  647 gaggaagtctaaatagttactccacatctccatca 681  Q
    ||| || ||||||||||||||||||||||||||||    
T  19377125 gagcaaatctaaatagttactccacatctccatca 19377159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 680
Target Start/End: Complemental strand, 24122286 - 24122237
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatctccatc 680  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||||    
T  24122286 gatatattgactccaagagtaactctaaggagttactccacatctccatc 24122237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 673
Target Start/End: Complemental strand, 19379140 - 19379097
Alignment:
Q  630 agatatattgactccaagaggaagtctaaatagttactccacat 673  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||    
T  19379140 agatatattgacttcaagagtaagtttaaatagttactccacat 19379097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 44289996 - 44289952
Alignment:
Q  637 ttgactccaagaggaagtctaaatagttactccacatctccatca 681  Q
    ||||||||||||  || ||||||||||||||||||||| ||||||    
T  44289996 ttgactccaagactaattctaaatagttactccacatccccatca 44289952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 674
Target Start/End: Complemental strand, 20009131 - 20009088
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  20009131 gatatattgactccaagagtaagtctaaagagttactccacatc 20009088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 674
Target Start/End: Complemental strand, 20123319 - 20123277
Alignment:
Q  632 atatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  20123319 atatattgactccaagagtaagtctaaagagttactccacatc 20123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 20008245 - 20008288
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||    
T  20008245 gatatattgactccaagagtaagtctaaagagttactctacatc 20008288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 29525112 - 29525155
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| || |||||| ||||||||||||||    
T  29525112 gatatattgactccaagagtaactctaaagagttactccacatc 29525155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 670
Target Start/End: Original strand, 20122581 - 20122623
Alignment:
Q  628 agagatatattgactccaagaggaagtctaaatagttactcca 670  Q
    |||||||||||||||||||||| || |||||| ||||||||||    
T  20122581 agagatatattgactccaagagtaaatctaaaaagttactcca 20122623  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 25344851 - 25344894
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  25344851 gatatattgactccaagagtaagtctaaagagttactccacatc 25344894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Complemental strand, 25345649 - 25345606
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||    
T  25345649 gatatattgactccaagagtaagtgtaaagagttactccacatc 25345606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 678
Target Start/End: Original strand, 21761969 - 21762015
Alignment:
Q  632 atatattgactccaagaggaagtctaaatagttactccacatctcca 678  Q
    |||||||||||||||||| || |||||  ||||||||||||||||||    
T  21761969 atatattgactccaagagtaactctaaggagttactccacatctcca 21762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 10555384 - 10555427
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  10555384 gatatattgactccaagagtaagtctaaagagttactccacatc 10555427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 23237046 - 23237089
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  23237046 gatatattgactccaagagtaagtctaaagagttactccacatc 23237089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 674
Target Start/End: Complemental strand, 23244402 - 23244359
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  23244402 gatatattgactccaagagtaagtctaaagagttactccacatc 23244359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 33766490 - 33766533
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  33766490 gatatattgactccaagagtaagtctaaagagttactccacatc 33766533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 42994482 - 42994525
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  42994482 gatatattgactccaagagtaagtctaaagagttactccacatc 42994525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 678
Target Start/End: Original strand, 21182908 - 21182956
Alignment:
Q  630 agatatattgactccaagaggaagtctaaatagttactccacatctcca 678  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||||    
T  21182908 agatatattgactccaagagtaactctaaggagttactccacatctcca 21182956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Complemental strand, 10556293 - 10556250
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||    
T  10556293 gatatattgactccaagactaagtctaaagagttactccacatc 10556250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Complemental strand, 33767385 - 33767342
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||    
T  33767385 gatatattgactccaagagtaagtttaaagagttactccacatc 33767342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 675
Target Start/End: Complemental strand, 27100426 - 27100382
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatct 675  Q
    ||||| ||||||||||||| || |||||| |||||||||||||||    
T  27100426 gatattttgactccaagagtaactctaaaaagttactccacatct 27100382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 627 - 674
Target Start/End: Original strand, 24195583 - 24195630
Alignment:
Q  627 gagagatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||||    
T  24195583 gagagatatattgactccaagagtaactctaaagagttactccacatc 24195630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 21436307 - 21436263
Alignment:
Q  630 agatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||    
T  21436307 agatatattgactctaagagtaagtctaaaaagttactccacatc 21436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 678
Target Start/End: Original strand, 11310711 - 11310758
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatctcca 678  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||    
T  11310711 gatatattgactccaagagtaactctaaggagttactccacatctcca 11310758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 678
Target Start/End: Original strand, 38977510 - 38977557
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatctcca 678  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||    
T  38977510 gatatattgactccaagagtaactctaaggagttactccacatctcca 38977557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 678
Target Start/End: Complemental strand, 7691 - 7644
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatctcca 678  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||    
T  7691 gatatattgactccaagagtaactctaaggagttactccacatctcca 7644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 18684312 - 18684355
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||    
T  18684312 gatatattgactccaagaataagtctaaaaagttactccacatc 18684355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 18729877 - 18729920
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||    
T  18729877 gatatattgactccaagaataagtctaaaaagttactccacatc 18729920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 263536 - 263579
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| || |||||| ||||||||||||||    
T  263536 gatatattgactccaagagtaactctaaagagttactccacatc 263579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Complemental strand, 264444 - 264401
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatc 674  Q
    ||||||||||||||||||| || |||||| ||||||||||||||    
T  264444 gatatattgactccaagagtaactctaaagagttactccacatc 264401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 678
Target Start/End: Original strand, 46914063 - 46914110
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatctcca 678  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||    
T  46914063 gatatattgactccaagagtaactctaaggagttactccacatctcca 46914110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 675
Target Start/End: Complemental strand, 33639697 - 33639653
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatct 675  Q
    ||||||||||||||||||| ||||||||| | |||||||| ||||    
T  33639697 gatatattgactccaagagtaagtctaaagacttactccagatct 33639653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 52341337 - 52341385
Alignment:
Q  627 gagagatatattgactccaagaggaagtctaaatagttactccacatct 675  Q
    ||||||||||||||||||||||| ||||||| | | |||||||| ||||    
T  52341337 gagagatatattgactccaagagtaagtctatacaattactccaaatct 52341385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 675
Target Start/End: Original strand, 19990281 - 19990325
Alignment:
Q  631 gatatattgactccaagaggaagtctaaatagttactccacatct 675  Q
    ||||||||||||||||||| ||||||||| | |||||||| ||||    
T  19990281 gatatattgactccaagagtaagtctaaagacttactccaaatct 19990325  T

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