View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610R-Insertion-16 (Length: 820)
Name: NF1610R-Insertion-16
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610R-Insertion-16 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 305 - 643
Target Start/End: Original strand, 48754837 - 48755175
Alignment:
| Q |
305 |
aatcatgttattgttcggattattatgctaaacttgttatttactaattttgaatgggttttactgttgctctggattttggaccatacttttgttacta |
404 |
Q |
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| T |
48754837 |
aatcatgttatttttcggattattatgcaaacctttttatttactaattttgaatgggttttaccgttgctctggattttggaccatacttttgttacta |
48754936 |
T |
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| Q |
405 |
tttttggagtcttttagtttttaatgtggctatggattgtggaccatacttttctaaagattggtcgtaatttatttacttatctaagagtaaatgtttt |
504 |
Q |
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| T |
48754937 |
tttttggagtcttttagtttttaatgtgactatggattgtggaccatacttttctaaagattggtcgtaatttatttacttatctaagagtaaatgtttt |
48755036 |
T |
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| Q |
505 |
tactcttttgtacagatcattttgtacttgtccgagtttatatattgatgaaattgatttgaattttcttctaatgcttaatgcttttggtatttatcat |
604 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48755037 |
tactcttttgtacaaatcattttgtacttgtccgagtttatatattgatgaaattgatttgaattttcttctaatgcttaatgcttttggtatttatcat |
48755136 |
T |
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| Q |
605 |
atcattcatatgtgatggtgctttcaaggatgcttggta |
643 |
Q |
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| T |
48755137 |
atcattcatatgtgatggtgctttcaaggatgcttggta |
48755175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 48754541 - 48754766
Alignment:
| Q |
9 |
ggtgggatattttgttctagccgtacaaatttgagagctgcaggatttcagctgggactgacgagattttgactcgatttcattttgtatttgtttattg |
108 |
Q |
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| T |
48754541 |
ggtgggatattttgttctagccgtacaaatttgagagctgcaggatttcagctgggactgacgagattttgactcgatttcattttttatttgtttattg |
48754640 |
T |
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| Q |
109 |
tggtgtgttatctctctgattgtggttacaaattagaacagttaattgtctgaagctcaatatggggatcaaagccctgaaacaccttgaatgactcaga |
208 |
Q |
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| T |
48754641 |
tggtgtgttgtctctctgattgtggttacaaattagaacagttaattgtctgaagctcaatatggggatcaaagccctgaaacaccttgaatgactcaga |
48754740 |
T |
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| Q |
209 |
aaaggccatttaagaggttgcctctg |
234 |
Q |
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| T |
48754741 |
aaaggccatttaagaggttgcctctg |
48754766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 706 - 814
Target Start/End: Original strand, 48755238 - 48755343
Alignment:
| Q |
706 |
acaaaagtcttgcacatgaattatatcttgtcaaatgtgaatatgtgatacacnnnnnnnnnaagtatattacatttgatataacttgttgcaattgtat |
805 |
Q |
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| T |
48755238 |
acaaaagtcttgcaaatgaattatatcttgtcaaatgtgaatatgtgatacac-ttttttttaag--tattacatttgatataacttgttgcaattgtat |
48755334 |
T |
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| Q |
806 |
ttcttgtta |
814 |
Q |
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||||||||| |
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| T |
48755335 |
ttcttgtta |
48755343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 49053220 - 49053265
Alignment:
| Q |
12 |
gggatattttgttctagccgtacaaatttgagagctgcaggatttc |
57 |
Q |
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| T |
49053220 |
gggatattttgttctagctgtacaaattcgagacctgcagggtttc |
49053265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 518
Target Start/End: Original strand, 44453160 - 44453206
Alignment:
| Q |
472 |
taatttatttacttatctaagagtaaatgtttttactcttttgtaca |
518 |
Q |
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| T |
44453160 |
taatttatttacttatttaagagaaaatgtttttattcttttttaca |
44453206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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