View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610R-Insertion-17 (Length: 835)
Name: NF1610R-Insertion-17
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610R-Insertion-17 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 477 - 835
Target Start/End: Original strand, 7278608 - 7278969
Alignment:
| Q |
477 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattct---ttcacacatttaccctcgctaccatcctc |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
7278608 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7278707 |
T |
|
| Q |
574 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaa |
673 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7278708 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcaccatcctcattcaccaaa |
7278807 |
T |
|
| Q |
674 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgcctt |
773 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278808 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgcctt |
7278907 |
T |
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| Q |
774 |
caacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagcc |
835 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
7278908 |
caacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcc |
7278969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 477 - 835
Target Start/End: Complemental strand, 7375231 - 7374870
Alignment:
| Q |
477 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattctt---tcacacatttaccctcgctaccatcctc |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
7375231 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7375132 |
T |
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| Q |
574 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaa |
673 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375131 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaa |
7375032 |
T |
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| Q |
674 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgcctt |
773 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375031 |
gcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgcctt |
7374932 |
T |
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| Q |
774 |
caacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagcc |
835 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
7374931 |
caacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcc |
7374870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 2 - 418
Target Start/End: Complemental strand, 7375727 - 7375290
Alignment:
| Q |
2 |
atcatcaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaag |
101 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375727 |
atcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaag |
7375628 |
T |
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| Q |
102 |
taaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcat |
201 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
7375627 |
taaaagctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcat |
7375528 |
T |
|
| Q |
202 |
cttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt------------ |
283 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
7375527 |
cttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccc |
7375428 |
T |
|
| Q |
284 |
---tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcct |
380 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375427 |
tcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcct |
7375328 |
T |
|
| Q |
381 |
cattgctctcctcattccccaaagcttcaaatttttca |
418 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
7375327 |
cattgttctcctcattccccaaagcttcaaatttttca |
7375290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 2 - 418
Target Start/End: Original strand, 7278112 - 7278549
Alignment:
| Q |
2 |
atcatcaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaag |
101 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278112 |
atcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaag |
7278211 |
T |
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| Q |
102 |
taaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcat |
201 |
Q |
| |
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|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
7278212 |
taaatgctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcat |
7278311 |
T |
|
| Q |
202 |
cttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt------------ |
283 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
7278312 |
cttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccc |
7278411 |
T |
|
| Q |
284 |
---tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcct |
380 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278412 |
tcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcct |
7278511 |
T |
|
| Q |
381 |
cattgctctcctcattccccaaagcttcaaatttttca |
418 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
7278512 |
cattgttctcctcattccccaaagcttcaaatttttca |
7278549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 642
Target Start/End: Original strand, 7278543 - 7278593
Alignment:
| Q |
592 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
642 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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|
| T |
7278543 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7278593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 7375296 - 7375246
Alignment:
| Q |
592 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
642 |
Q |
| |
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|||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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| T |
7375296 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7375246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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