View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610R-Insertion-19 (Length: 1060)
Name: NF1610R-Insertion-19
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610R-Insertion-19 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 382 - 938
Target Start/End: Complemental strand, 49192814 - 49192248
Alignment:
| Q |
382 |
tatagttggcttaaacaataaataatcagggtaattaattgatattcagccttatgttggtttaaaaa-tgttagtctttccttcttcaaccattatgtt |
480 |
Q |
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| T |
49192814 |
tatagttggcttaaacaataa----tcagggtaattaattgatattcagccttatgttggtttaaaaaatgttagtctttccttcttcaaccattatgtt |
49192719 |
T |
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| Q |
481 |
taagcggattacattaaatttaacttaaaagttaaaatattttgagatgcttttgaaagtacatttgtataagtcaaaccatgatattaattagatttga |
580 |
Q |
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| T |
49192718 |
taagcggattacattaaatttaacttaaaaattaaaaaattttgagacgcttttgaaagtacatttgtataagtcaagccatgatattaattagatttga |
49192619 |
T |
|
| Q |
581 |
ttgataactcctaaacgaataaggttggcttaccgtaaacaaaaacaaaaaagaataaggctgacctnnnnnnnnttcatttataaatcacaagctacga |
680 |
Q |
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| T |
49192618 |
ttggtaactcctaaacgaataaggttggccta-tgtaaacaaaaacaaaaaagaataaggctgacctaaaaaaaatttatttttagatcacaaggtacga |
49192520 |
T |
|
| Q |
681 |
atttaagtcagatttatgaaactccattttaagttggatttgattggtgactctccatttttaggtcctctaaatacaattatgaaagaaaatgaataag |
780 |
Q |
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| T |
49192519 |
atttaagtcagatttatgaaactcca--ttaagtcggatttgattggtgactctccatttttaggtcctctaaatacaattatgaaagaaaatgaataag |
49192422 |
T |
|
| Q |
781 |
gcttagagggacca-----------aaatttgtatccatctttaacttttttctttaaagattgtcctaaat-----aannnnnnnattgataatgctac |
864 |
Q |
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| T |
49192421 |
gtttagagggaccaaaatttgacggaaatttgtatccgtctttaactttttt-tttaaagattgtcgtaaatgaatatatttttttattgataatgctac |
49192323 |
T |
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| Q |
865 |
catataagttcaaatttgacattaattagttttgactcatt-atcctaagtaaataaaattgacgaaacatgtat |
938 |
Q |
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| T |
49192322 |
catataagttcaaatttgacattaattagttttgactcattaatcctaagtaaataaaattgacgaaacatgtat |
49192248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 49193202 - 49192865
Alignment:
| Q |
8 |
atgaagggtgagtttgatgcataccaaatgcagagaaaaattaaacgatggcgtgttctatacaatatttgttaaagaggaaggatttcaaacagaaata |
107 |
Q |
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| T |
49193202 |
atgaagggtgagtttgatgcatacccaatacagagaaaaattaaacgatggcgtgttctatacaatatttgttaaagaggaaggatttcaaagagaaata |
49193103 |
T |
|
| Q |
108 |
tgaagcatatttacggccaattcacaaagtttagatagaaatatacgttatggtttaatacaggtgcaacaatacacttggcttaaacaataatgaacga |
207 |
Q |
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| T |
49193102 |
tgaagcatatttacggccaattcacaaagtttagatagaaatatacgttgcggtttaatacaggtgcaacaatacacttggcttaaacaataatgaacga |
49193003 |
T |
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| Q |
208 |
tatagttggcttaaaa----------------------tcccaaaaataaataatcatcgtgagcatagatatctagagacatgcattgttatatgcagg |
285 |
Q |
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| T |
49193002 |
tatagttggcttaaaatccaaaaaataaaggcttaaaatcccaaaaataaataatcatcgtgagc----atatctagagacatgcattgttatatgcagg |
49192907 |
T |
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| Q |
286 |
tgatccgggttcgaatcgcggactctatacttattcatcttg |
327 |
Q |
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| T |
49192906 |
tgatccgggttcgaatcgcggactcttcacttatttatcttg |
49192865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 42553212 - 42553135
Alignment:
| Q |
264 |
gacatgcattgttatatgcaggtgatccgggttcgaatcgcggactctatacttattcatcttgaaaaa-gtgaattcta |
342 |
Q |
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| T |
42553212 |
gacatgcattgttatatgcag--ggtcggggttcgaaccccggacactacacttattcaccttgaaaaatgtgaattcta |
42553135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 11238100 - 11238021
Alignment:
| Q |
264 |
gacatgcattgttatatgcaggtgatccgggttcgaatcgcggactctatacttattcatcttgaaaaa-gtgaattctag |
343 |
Q |
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| T |
11238100 |
gacatgcattattatatgcagggg-tcggggttcgaatcccggacaccccacttattcatcttgaaaaaggtgaattctag |
11238021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 8903863 - 8903785
Alignment:
| Q |
267 |
atgcattgttatatgcaggtgatccgggttcgaatcgcggactctatacttattcatcttgaa-aaagtgaattctagtca |
346 |
Q |
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|||||||||||||||||| |||| ||||||||| | | ||| | |||||||||||||||| ||||||||||||||||| |
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| T |
8903863 |
atgcattgttatatgcag--gatcggggttcgaaccccagacacatcacttattcatcttgaataaagtgaattctagtca |
8903785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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