View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1610R-Insertion-5 (Length: 96)
Name: NF1610R-Insertion-5
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610R-Insertion-5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 89; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 43692058 - 43691970
Alignment:
| Q |
8 |
acgtactactcacaaccaaacagtcatcagcaagtaaagtcctctagaaagctatggaaataataaaagaggggattgctgtcaaggtc |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43692058 |
acgtactactcacaaccaaacagtcatcagcaagtaaagtcctctagaaagctatggaaataataaaagaggggattgctgtcaaggtc |
43691970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 43681827 - 43681783
Alignment:
| Q |
11 |
tactactcacaaccaaacagtcatcagcaagtaaagtcctctaga |
55 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
43681827 |
tactactcacaaccaactagtcatcagcaagtaaagtcccctaga |
43681783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University