View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1610R-Insertion-8 (Length: 316)
Name: NF1610R-Insertion-8
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610R-Insertion-8 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 46018893 - 46019200
Alignment:
| Q |
9 |
cacccatcatcatctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccagagccaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46018893 |
cacccatcatcatctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaa |
46018992 |
T |
|
| Q |
109 |
atcatatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaataacatttcaaacaacagtatattttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46018993 |
atcatatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaataatatttcaaacaacagtatattttc |
46019092 |
T |
|
| Q |
209 |
ttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccgaggccaactgcttgtcaagcgttccatc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
46019093 |
ttacatttcttaatgaatcttcattagttatcaacagctgcaaaaaatccttaatagtgtgtattccatccaaggccaactgcttgtcaagtgttccatc |
46019192 |
T |
|
| Q |
309 |
tctacgta |
316 |
Q |
| |
|
|||||||| |
|
|
| T |
46019193 |
tctacgta |
46019200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 46031701 - 46031819
Alignment:
| Q |
181 |
ataacatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccg |
280 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| | |||||||||| ||||||| ||||| ||| |||||| ||||||| ||||||||||||||| | |
|
|
| T |
46031701 |
ataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctg |
46031800 |
T |
|
| Q |
281 |
aggccaactgcttgtcaag |
299 |
Q |
| |
|
| |||||| |||||||||| |
|
|
| T |
46031801 |
atgccaacagcttgtcaag |
46031819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 46031549 - 46031637
Alignment:
| Q |
21 |
tctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccagagccaaaaa |
109 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| | |||||| | |||| || ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
46031549 |
tctacatcacaatctttagcatgtgcaacaattgtattccatgaattccttgcaatcttgcctattttctattttcccaaagccaaaaa |
46031637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University