View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1610R-Insertion-9 (Length: 316)

Name: NF1610R-Insertion-9
Description: NF1610R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1610R-Insertion-9
NF1610R-Insertion-9
[»] chr1 (1 HSPs)
chr1 (10-316)||(34055359-34055665)
[»] chr3 (8 HSPs)
chr3 (155-255)||(47381252-47381351)
chr3 (155-251)||(47816721-47816816)
chr3 (22-159)||(47381702-47381822)
chr3 (10-76)||(47817261-47817327)
chr3 (157-237)||(45113354-45113434)
chr3 (253-309)||(47381173-47381229)
chr3 (95-159)||(47817195-47817259)
chr3 (253-315)||(47816634-47816694)
[»] chr8 (2 HSPs)
chr8 (157-255)||(40243962-40244059)
chr8 (22-128)||(40244398-40244503)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 34055359 - 34055665
Alignment:
Q  10 cagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055359 cagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagca 34055458  T
Q  110 ggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34055459 ggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttcactggctggaatctcctctccaaaggtggatc 34055558  T
Q  210 tttttcaatgtgcttcctgtattcatcctagagttgtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055559 tttttcaatgtgcttcctgtattcatcctagtgttgtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat 34055658  T
Q  310 gtcttcg 316  Q
    |||||||    
T  34055659 gtcttcg 34055665  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 47381351 - 47381252
Alignment:
Q  155 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctccta 254  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  47381351 tcacagttggctctggcactttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcat-ctagtgttgtggctccta 47381253  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 47816816 - 47816721
Alignment:
Q  155 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctc 251  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  47816816 tcacagttggctctagcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc 47816721  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 47381822 - 47381702
Alignment:
Q  22 tcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaa 121  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||                  |||||||||||||||||| ||||||||    
T  47381822 tcaaatctatagctttgtcaggcaaaaatcgatcactgcagaagacataattatt-----------------attaagataaacagcaggtggaaaacaa 47381740  T
Q  122 caagatacgaagtacattttgattcattcatattcaca 159  Q
    ||||||||   ||||| |||||||||||||||||||||    
T  47381739 caagatacagggtacagtttgattcattcatattcaca 47381702  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 47817327 - 47817261
Alignment:
Q  10 cagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattatt 76  Q
    |||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47817327 cagcttcgtcaatcaaatctatagctttgtcaggcaaaaatcgaccactgcagaagacataattatt 47817261  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 45113434 - 45113354
Alignment:
Q  157 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcc 237  Q
    |||||||| | ||| |||||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||    
T  45113434 acagttggttctggtactttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatcc 45113354  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 47381229 - 47381173
Alignment:
Q  253 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat 309  Q
    ||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||    
T  47381229 tatttacttaagagatgaaagttgtggcaaattcagcatatgcacaaccatatatat 47381173  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 47817259 - 47817195
Alignment:
Q  95 ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 159  Q
    |||||||||||||||||| ||||||||||||||||   ||||| ||| |||||||||||||||||    
T  47817259 ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttaattcattcatattcaca 47817195  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 47816694 - 47816634
Alignment:
Q  253 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttc 315  Q
    |||||||||||||||||||| |||||||||| | |||||||  | | ||||||||||||||||    
T  47816694 tatttacttaagagatggaagttgtggcaagctgagcatat--acagccatatatatgtcttc 47816634  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 40244059 - 40243962
Alignment:
Q  157 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctat 255  Q
    |||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40244059 acagttggctctggcactttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcat-ctagagttgtggctcctat 40243962  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 40244503 - 40244398
Alignment:
Q  22 tcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaa 121  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||  ||||||| |||| | |||||||||| |||||| | ||    
T  40244503 tcaaatctatagctttgtcaggcaaaaatcgatcgctgcaaaagtcataattattttatgagtgagaaaacacttga-ataaacagcaagtagaagataa 40244405  T
Q  122 caagata 128  Q
    |||||||    
T  40244404 caagata 40244398  T

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