View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1610_high_1 (Length: 709)

Name: NF1610_high_1
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1610_high_1
NF1610_high_1
[»] chr2 (4 HSPs)
chr2 (16-673)||(19376503-19377164)
chr2 (22-71)||(24122237-24122286)
chr2 (29-72)||(19379097-19379140)
chr2 (19-65)||(44289950-44289996)
[»] chr7 (5 HSPs)
chr7 (28-71)||(20009088-20009131)
chr7 (28-70)||(20123277-20123319)
chr7 (28-71)||(20008245-20008288)
chr7 (28-71)||(29525112-29525155)
chr7 (32-74)||(20122581-20122623)
[»] chr6 (5 HSPs)
chr6 (28-71)||(25344851-25344894)
chr6 (28-71)||(25345606-25345649)
chr6 (24-70)||(21761969-21762015)
chr6 (19-71)||(21777844-21777896)
chr6 (19-71)||(29414529-29414581)
[»] chr5 (9 HSPs)
chr5 (28-71)||(10555384-10555427)
chr5 (28-71)||(23237046-23237089)
chr5 (28-71)||(23244359-23244402)
chr5 (28-71)||(33766490-33766533)
chr5 (28-71)||(42994482-42994525)
chr5 (24-72)||(21182908-21182956)
chr5 (28-71)||(10556250-10556293)
chr5 (28-71)||(33767342-33767385)
chr5 (27-71)||(27100382-27100426)
[»] chr4 (4 HSPs)
chr4 (28-75)||(24195583-24195630)
chr4 (28-72)||(21436263-21436307)
chr4 (24-71)||(11310711-11310758)
chr4 (24-71)||(38977510-38977557)
[»] scaffold0548 (1 HSPs)
scaffold0548 (24-71)||(7644-7691)
[»] chr8 (2 HSPs)
chr8 (28-71)||(18684312-18684355)
chr8 (28-71)||(18729877-18729920)
[»] chr3 (5 HSPs)
chr3 (28-71)||(263536-263579)
chr3 (28-71)||(264401-264444)
chr3 (24-71)||(46914063-46914110)
chr3 (27-71)||(33639653-33639697)
chr3 (27-75)||(52341337-52341385)
[»] chr1 (3 HSPs)
chr1 (19-71)||(1614909-1614961)
chr1 (27-71)||(19990281-19990325)
chr1 (19-75)||(34736575-34736631)


Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Complemental strand, 19377164 - 19376503
Alignment:
Q  16 atgaatgatggagatgtggagtaactatttagacttcctcttggagtcaatatatctctcatttatgcaatatattaaaaaatattgtaatacaatannn 115  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||       
T  19377164 atgaatgatggagatgtggagtaactatttagatttgctcttggagtcaatatatctctcatctatgcaatatattaaaaaatattttaatacaatattt 19377065  T
Q  116 nnnnn-ggtggggttttgatacaatatttaatgatcgtattcaatatgaaccaaagaattaataaaaaataatattgttttttcttttacaaaattaatt 214  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19377064 ttttttggtggggttttgatacaatatttaatgatcgtattcaatatgaaccaaagaattaataaaaaataatattgttttttcttttacaaaattaatt 19376965  T
Q  215 aactccggaagtatttttgtaatttaaactggaagtgtaggtacacaatttaataactttaaatatgagttgttcttnnnnnnnnnnn---tatgagttg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||    
T  19376964 aactccggaagtatttttgtaatttaaactggaagtgtaggtacacaatttaataactttaaatatgagttgttctttcaaaaaaaaaaaatatgagttg 19376865  T
Q  312 ttgaccgacacttcaatggggacttcaatggagacttgttgctattgtgagtacaaatgctcccatattgatattagctagatatgagttatgagaccaa 411  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19376864 ttgaccgacacttcaatggggacttcaattgagacttgttgctattgtgagtacaaatgctcccgtattgatattagctagatatgagttatgagaccaa 19376765  T
Q  412 tgacnnnnnnnctctggtaggttttttatggttgggttatttaactacaaatattaaaataatattaaaatcttcttagattacttgctatacgatcttt 511  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19376764 tgactttttttctctggtaggttttttatggttgggttatttaactacaaattttaaaataatattaaaatcttcttagattacttgctatacgatcttt 19376665  T
Q  512 aaaattgaattactcgggttacactttaaatgttgagtcttggatgtgatgaaggtgttacgagtcttataaaagtgatatggctatgataattattata 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  19376664 aaaattgaattactcgggttacactttaaatgttgagtcttggatgtgatgaaggtgttacgagtcttataaaaatgatatggctatgataattatttta 19376565  T
Q  612 agaaaatgctaacgagtgtcattagaatattctttaacaaccttaaaatggtaaaattaaat 673  Q
    |  ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  19376564 aagaaatgctaaggagtgtcgttagaatattctttaacaatcttaaaatggtaaaattaaat 19376503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 24122237 - 24122286
Alignment:
Q  22 gatggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    ||||||||||||||||||||  ||||| || |||||||||||||||||||    
T  24122237 gatggagatgtggagtaactccttagagttactcttggagtcaatatatc 24122286  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 19379097 - 19379140
Alignment:
Q  29 atgtggagtaactatttagacttcctcttggagtcaatatatct 72  Q
    |||||||||||||||||| |||| |||||| |||||||||||||    
T  19379097 atgtggagtaactatttaaacttactcttgaagtcaatatatct 19379140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 44289950 - 44289996
Alignment:
Q  19 aatgatggagatgtggagtaactatttagacttcctcttggagtcaa 65  Q
    |||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  44289950 aatgatggggatgtggagtaactatttagaattagtcttggagtcaa 44289996  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 20009088 - 20009131
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  20009088 gatgtggagtaactctttagacttactcttggagtcaatatatc 20009131  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 20123277 - 20123319
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatat 70  Q
    |||||||||||||| ||||||||| ||||||||||||||||||    
T  20123277 gatgtggagtaactctttagacttactcttggagtcaatatat 20123319  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 20008288 - 20008245
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||    
T  20008288 gatgtagagtaactctttagacttactcttggagtcaatatatc 20008245  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 29525155 - 29525112
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||||| || |||||||||||||||||||    
T  29525155 gatgtggagtaactctttagagttactcttggagtcaatatatc 29525112  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 20122623 - 20122581
Alignment:
Q  32 tggagtaactatttagacttcctcttggagtcaatatatctct 74  Q
    |||||||||| |||||| || ||||||||||||||||||||||    
T  20122623 tggagtaactttttagatttactcttggagtcaatatatctct 20122581  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 25344894 - 25344851
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  25344894 gatgtggagtaactctttagacttactcttggagtcaatatatc 25344851  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 25345606 - 25345649
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||| |||| |||||||||||||||||||    
T  25345606 gatgtggagtaactctttacacttactcttggagtcaatatatc 25345649  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 21762015 - 21761969
Alignment:
Q  24 tggagatgtggagtaactatttagacttcctcttggagtcaatatat 70  Q
    ||||||||||||||||||  ||||| || ||||||||||||||||||    
T  21762015 tggagatgtggagtaactccttagagttactcttggagtcaatatat 21761969  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 21777844 - 21777896
Alignment:
Q  19 aatgatggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||| ||| |||||||||||||| |||||| || ||||||||||||| |||||    
T  21777844 aatggtggggatgtggagtaactctttagagttactcttggagtcaaaatatc 21777896  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 29414529 - 29414581
Alignment:
Q  19 aatgatggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||| ||| |||||||||||||| |||||| || ||||||||||||| |||||    
T  29414529 aatggtggggatgtggagtaactctttagagttactcttggagtcaaaatatc 29414581  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 10555427 - 10555384
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  10555427 gatgtggagtaactctttagacttactcttggagtcaatatatc 10555384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 23237089 - 23237046
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  23237089 gatgtggagtaactctttagacttactcttggagtcaatatatc 23237046  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 23244359 - 23244402
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  23244359 gatgtggagtaactctttagacttactcttggagtcaatatatc 23244402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 33766533 - 33766490
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  33766533 gatgtggagtaactctttagacttactcttggagtcaatatatc 33766490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 42994525 - 42994482
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  42994525 gatgtggagtaactctttagacttactcttggagtcaatatatc 42994482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 21182956 - 21182908
Alignment:
Q  24 tggagatgtggagtaactatttagacttcctcttggagtcaatatatct 72  Q
    ||||||||||||||||||  ||||| || ||||||||||||||||||||    
T  21182956 tggagatgtggagtaactccttagagttactcttggagtcaatatatct 21182908  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 10556250 - 10556293
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||||||||  ||||||||||||||||||    
T  10556250 gatgtggagtaactctttagacttagtcttggagtcaatatatc 10556293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 33767342 - 33767385
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||| |||| |||||||||||||||||||    
T  33767342 gatgtggagtaactctttaaacttactcttggagtcaatatatc 33767385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 27100382 - 27100426
Alignment:
Q  27 agatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    ||||||||||||||| |||||| || ||||||||||||| |||||    
T  27100382 agatgtggagtaactttttagagttactcttggagtcaaaatatc 27100426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 24195630 - 24195583
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatctctc 75  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||    
T  24195630 gatgtggagtaactctttagagttactcttggagtcaatatatctctc 24195583  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 21436263 - 21436307
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatct 72  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||    
T  21436263 gatgtggagtaactttttagacttactcttagagtcaatatatct 21436307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 11310758 - 11310711
Alignment:
Q  24 tggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||||    
T  11310758 tggagatgtggagtaactccttagagttactcttggagtcaatatatc 11310711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 38977557 - 38977510
Alignment:
Q  24 tggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||||    
T  38977557 tggagatgtggagtaactccttagagttactcttggagtcaatatatc 38977510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 7644 - 7691
Alignment:
Q  24 tggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||||    
T  7644 tggagatgtggagtaactccttagagttactcttggagtcaatatatc 7691  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 18684355 - 18684312
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||||||||  ||||||||||||||||||    
T  18684355 gatgtggagtaactttttagacttattcttggagtcaatatatc 18684312  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 18729920 - 18729877
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||||||||  ||||||||||||||||||    
T  18729920 gatgtggagtaactttttagacttattcttggagtcaatatatc 18729877  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 263579 - 263536
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||||| || |||||||||||||||||||    
T  263579 gatgtggagtaactctttagagttactcttggagtcaatatatc 263536  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 264401 - 264444
Alignment:
Q  28 gatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||||||||||||| |||||| || |||||||||||||||||||    
T  264401 gatgtggagtaactctttagagttactcttggagtcaatatatc 264444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 46914110 - 46914063
Alignment:
Q  24 tggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||||    
T  46914110 tggagatgtggagtaactccttagagttactcttggagtcaatatatc 46914063  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 33639653 - 33639697
Alignment:
Q  27 agatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||| |||||||| | ||||||||| |||||||||||||||||||    
T  33639653 agatctggagtaagtctttagacttactcttggagtcaatatatc 33639697  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 52341385 - 52341337
Alignment:
Q  27 agatgtggagtaactatttagacttcctcttggagtcaatatatctctc 75  Q
    |||| |||||||| | | ||||||| |||||||||||||||||||||||    
T  52341385 agatttggagtaattgtatagacttactcttggagtcaatatatctctc 52341337  T

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Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 1614909 - 1614961
Alignment:
Q  19 aatgatggagatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||| ||| |||||||||||||| |||||| || ||||||||||||| |||||    
T  1614909 aatggtggggatgtggagtaactctttagagttactcttggagtcaaaatatc 1614961  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 19990325 - 19990281
Alignment:
Q  27 agatgtggagtaactatttagacttcctcttggagtcaatatatc 71  Q
    |||| |||||||| | ||||||||| |||||||||||||||||||    
T  19990325 agatttggagtaagtctttagacttactcttggagtcaatatatc 19990281  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 34736575 - 34736631
Alignment:
Q  19 aatgatggagatgtggagtaactatttagacttcctcttggagtcaatatatctctc 75  Q
    |||| ||| ||||||||| |||| |||||| || ||||||||||||| |||||||||    
T  34736575 aatggtggggatgtggagcaactctttagaattactcttggagtcaaaatatctctc 34736631  T

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