View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1610_high_3 (Length: 596)
Name: NF1610_high_3
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 155 - 581
Target Start/End: Original strand, 43554741 - 43555177
Alignment:
| Q |
155 |
ggcatcgtggattacaagttagaacttagaatattgaattaccaggcataaaatgttgaagtcaattacttacactattaaaattagcacatagacacgc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43554741 |
ggcatcgtggattacaagttagaacttaaaatattgaattaccaggcataaaatgttaaagtcaattacttacactattaaaattagcacatagacacgc |
43554840 |
T |
|
| Q |
255 |
tatttcaaatcaaaaacgttatttgaacgccatgcatccactccattcagtgaaaaataaacacagaacaagttctataaattgtgtcctccaacttttt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43554841 |
tatttcaaatcaaaaacgttatttgaacgccatgcatccactccattcagtgaaaaataaacacagaacaagttctataaattgtgtcctccaacttttt |
43554940 |
T |
|
| Q |
355 |
ctttcatatagaacatttttatgtctacaaaaattaagaacgaactgagtcacgtagtaatgttgttggatcatgaagt-aagtccaaaaaacaatcaca |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
43554941 |
ctttcatatagaacatttttatgtctacaaaaattaagaacgaactgagtcacgtagtaatgttgttggatcatgaagtaaagtccaaaaaataatcaca |
43555040 |
T |
|
| Q |
454 |
ttgagtcacaaacaattatattttaattcaaaactttaagacatcaaatatataactctttatcattt---------ttgcattgtaacgtctattattt |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43555041 |
ttgagtcacaaacaattatattttaattcaaaactttaagacatcaaatatataactctttatcatttacatgttgcttgcattgtaacgtctattattt |
43555140 |
T |
|
| Q |
545 |
atgaaatgtgacacattgttgagactagtcatccgat |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43555141 |
atgaaatgtgacacattgttgagactagtcatccgat |
43555177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University