View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610_high_4 (Length: 553)
Name: NF1610_high_4
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 29955807 - 29955267
Alignment:
| Q |
1 |
tcctatctgggttttcttgccttatcttgtgtataatgtgactagcggaaaagacattatgtctatgcctctatggtgtagtagaagtttagaactgtaa |
100 |
Q |
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| T |
29955807 |
tcctatctgggttttcttgccttatcttgtgtataatgtgactagcggaaaagacattatgtctatgcctctatggtgtagtagaagtttagaactgtaa |
29955708 |
T |
|
| Q |
101 |
gcattatatcatttgatcaagataatcatgcagtcaagggttcgttgtatttggatgaagatcacacgacctgtaatctgagttcacctaatcttccttg |
200 |
Q |
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| T |
29955707 |
gcattatatcatttgatcaagataatcatgcagtcaagggttcgttgtatttggatgaagatcacacgacctgtaatctgagttcacctaatcttccttg |
29955608 |
T |
|
| Q |
201 |
aagttaaaacttggaatataagccgttcgattttcatccacttgtcaagtgtgactgcaaagaatccaactccatcagggatataccttgaaaattagtt |
300 |
Q |
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| T |
29955607 |
aagttaaaacttggaatataagccgttcgattttcatccacttgtcaagtgtgactgcaaagaatccaactccatcagggatataccttgaaaattagtt |
29955508 |
T |
|
| Q |
301 |
atgtattaatgtaaacacgatgtagagaaatatgttagcatactattagttagtaatagatttcatagaatgtgattaacaaagctgttgcatatgacta |
400 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29955507 |
atgtattaatgtaaacacgatgtagataaatatgttagcatactattagttagtaataggtttcatagaatgtgattaacaaagctgttgcatatgacta |
29955408 |
T |
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| Q |
401 |
cagaatgcaggttgaggtgagcaaatacacagaaggtgtgaatgagaaggcactaagaccaaatggattaccaaaatcattaattcgctatgacggtaat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29955407 |
cagaatgcaggttgaggtgagcaaatacacagaaggtgtgaatgagaaggcactaagaccaaatggattaccaaaatcattaattcgctatgacggtaat |
29955308 |
T |
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| Q |
501 |
acaaacaattgagccattttttgagatattgtgttatgatg |
541 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
29955307 |
acaaacaattgagccattttttgagatattgtgtgatgatg |
29955267 |
T |
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