View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610_high_9 (Length: 302)
Name: NF1610_high_9
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 3798318 - 3798046
Alignment:
| Q |
19 |
gtcttgctcgaaaacaccggttttcgatcgtttatggttaaactcggtatgtagaaaagtgaccttgcaaccatgtttggctagaacttgtgagaattgc |
118 |
Q |
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| T |
3798318 |
gtcttgctcgaaaacaccggttttcgatcgtttatggttaaactcagtatgtagaaaagtgaccttgcaaccatgtttggctagaacttgtgagaattgc |
3798219 |
T |
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| Q |
119 |
ataagggggttaacatgtccttgaactggaaatggtataacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataattatattat |
218 |
Q |
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| T |
3798218 |
ataagggggttaacatgtccttgaactggaaatggtataacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataattatattat |
3798119 |
T |
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| Q |
219 |
tatgataagaattgcaaatatttttaggacagaagaatggttcttggatgaaatatttgtactttgtattcat |
291 |
Q |
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| T |
3798118 |
tatgacaagaattgcaaatatttttaggacagaagaatggttcttggatgaaatatttgtactttgtattcat |
3798046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 3791039 - 3791306
Alignment:
| Q |
19 |
gtcttgctcgaaaacaccggttttcgatcgtttatggttaaactcggtatgtagaaaagtgaccttgcaaccatgtttggctagaacttgtgagaattgc |
118 |
Q |
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| T |
3791039 |
gtcttgctcggaaacaccggttttcgatcgttcatggttaaactcagtatgtagaaaagtgactttgcaaccatggttggctagaatttgtgagaattgc |
3791138 |
T |
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| Q |
119 |
ataagggggttaacatgtccttgaactggaaatggtataacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataattatattat |
218 |
Q |
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| T |
3791139 |
ataaggggattcacatgtccttgaactggatatggtatagcaagaaaatgaggcaatataaccatttgcttagtt----gctggaaaataattatattat |
3791234 |
T |
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| Q |
219 |
tatgataagaattgcaaatatttttaggacagaagaatggttcttggatgaaatatttgtactttgtattcat |
291 |
Q |
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| T |
3791235 |
tgtgacaagaattgaaaata-ttttaggacagaagaacggctcttgggtgaaatatttgtactttgtattcat |
3791306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 3758969 - 3759063
Alignment:
| Q |
74 |
aaagtgaccttgcaaccatgtttggctagaacttgtgagaattgcataagggggttaacatgtccttgaactggaaatggtataacaagaaaatg |
168 |
Q |
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| T |
3758969 |
aaagtgattttgcatccatgtttggctaaaacatgagagaattgcataaggggattcatatgtcctagaattgggaatggtattgcaagaaaatg |
3759063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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