View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1610_low_10 (Length: 337)

Name: NF1610_low_10
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1610_low_10
NF1610_low_10
[»] chr1 (1 HSPs)
chr1 (14-323)||(34055359-34055668)
[»] chr3 (8 HSPs)
chr3 (78-178)||(47381252-47381351)
chr3 (82-178)||(47816721-47816816)
chr3 (174-311)||(47381702-47381822)
chr3 (257-323)||(47817261-47817327)
chr3 (96-176)||(45113354-45113434)
chr3 (24-80)||(47381173-47381229)
chr3 (174-238)||(47817195-47817259)
chr3 (18-80)||(47816634-47816694)
[»] chr8 (2 HSPs)
chr8 (78-176)||(40243962-40244059)
chr8 (205-311)||(40244398-40244503)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 34055668 - 34055359
Alignment:
Q  14 gaacgaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaataggagccacaactctaggatgaatacaggaagca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34055668 gaacgaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaataggagccacaacactaggatgaatacaggaagca 34055569  T
Q  114 cattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgtacttcgtatcttgtt 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055568 cattgaaaaagatccacctttggagaggagattccagccagtgaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgtacttcgtatcttgtt 34055469  T
Q  214 gttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctgcagtgatcaatttttgcctgacaaagctatagatttgaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055468 gttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctgcagtgatcaatttttgcctgacaaagctatagatttgaat 34055369  T
Q  314 gccgaagctg 323  Q
    ||||||||||    
T  34055368 gccgaagctg 34055359  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 47381252 - 47381351
Alignment:
Q  78 ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtg 177  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  47381252 ataggagccacaacactag-atgaatacaggaagcacattgaaaaagatccagctttggagaggagattccagccagttaaagtgccagagccaactgtg 47381350  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 47816721 - 47816816
Alignment:
Q  82 gagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtga 178  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||    
T  47816721 gagccacaacactag-atgaatacaggaagcacattgaagaagatccagctttggagaggaaattccagccagttaaagtgctagagccaactgtga 47816816  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 174 - 311
Target Start/End: Original strand, 47381702 - 47381822
Alignment:
Q  174 tgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctg 273  Q
    ||||||||||||||||||||| |||||   |||||||||||||||| ||||||||||||||||||                  |||||||||||||||||    
T  47381702 tgtgaatatgaatgaatcaaactgtaccctgtatcttgttgttttccacctgctgtttatcttaat-----------------aataattatgtcttctg 47381784  T
Q  274 cagtgatcaatttttgcctgacaaagctatagatttga 311  Q
    |||||||| |||||||||||||||||||||||||||||    
T  47381785 cagtgatcgatttttgcctgacaaagctatagatttga 47381822  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 47817261 - 47817327
Alignment:
Q  257 aataattatgtcttctgcagtgatcaatttttgcctgacaaagctatagatttgaatgccgaagctg 323  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||    
T  47817261 aataattatgtcttctgcagtggtcgatttttgcctgacaaagctatagatttgattgacgaagctg 47817327  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 45113354 - 45113434
Alignment:
Q  96 ggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt 176  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||||||||||| ||| | ||||||||    
T  45113354 ggatgaatacaggaagcacatcgaaaaagacccagctttggagagacgattccagccagttaaagtaccagaaccaactgt 45113434  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 47381173 - 47381229
Alignment:
Q  24 atatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaata 80  Q
    |||||||||||| ||||||||||||| ||||||||| || |||||||||||||||||    
T  47381173 atatatatggttgtgcatatgctgaatttgccacaactttcatctcttaagtaaata 47381229  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 47817195 - 47817259
Alignment:
Q  174 tgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatcttaa 238  Q
    ||||||||||||||||| ||| |||||   |||||||||||||||| ||||||||||||||||||    
T  47817195 tgtgaatatgaatgaattaaactgtaccctgtatcttgttgttttccacctgctgtttatcttaa 47817259  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 47816634 - 47816694
Alignment:
Q  18 gaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaata 80  Q
    |||||||||||||||| | |  ||||||| | |||||||||| ||||||||||||||||||||    
T  47816634 gaagacatatatatggctgt--atatgctcagcttgccacaacttccatctcttaagtaaata 47816694  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 40243962 - 40244059
Alignment:
Q  78 ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt 176  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||| ||||||||||    
T  40243962 ataggagccacaactctag-atgaatataggaagcacattgaaaaagatccagctttggagaggcgattccaacctgttaaagtgccagagccaactgt 40244059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 311
Target Start/End: Original strand, 40244398 - 40244503
Alignment:
Q  205 tatcttgttgttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctgcagtgatcaatttttgcctgacaaagctata 304  Q
    ||||||||| | |||||| |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||    
T  40244398 tatcttgttatcttctacttgctgtttat-tcaagtgttttctcactcataaaataattatgacttttgcagcgatcgatttttgcctgacaaagctata 40244496  T
Q  305 gatttga 311  Q
    |||||||    
T  40244497 gatttga 40244503  T

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