View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610_low_2 (Length: 676)
Name: NF1610_low_2
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 23 - 671
Target Start/End: Complemental strand, 28544821 - 28544174
Alignment:
| Q |
23 |
cgtcattctttgaacagttctctacaggttattttctaacagatctggcttttattatttggaattttccagctttgggaggtctggaatatgtaagtca |
122 |
Q |
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| T |
28544821 |
cgtcattctttgaacagttctctacaggttattttctaacagatctggcttttattatttggaattttccagctttgggaggtctggaatatgtaagtca |
28544722 |
T |
|
| Q |
123 |
aaaagatattagggcctatttacgttgtaaaaatgtttcatatcttcatttcttattttcacttctaattatgaaatttcaaccttgttttcatttacct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28544721 |
aaaagatattagggcctatttacgttgtaaaaatgtttcatatcttcatttcttattttcacttctaattatgaaatttcaaccttgttttcatttacct |
28544622 |
T |
|
| Q |
223 |
gctttcaaaattttgtgtaagaaacaaagaaaacaatactaaagtgtctccttgttttcatttatatcttgtttttaatgatttgtgtagcaaacaacga |
322 |
Q |
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| T |
28544621 |
gctttcaaaattttgtgtaagaaacaaagaaaacaatactaaagtgtctccttgttttcatttatatcttgtttttaatgatttgtgtagcaaacaacga |
28544522 |
T |
|
| Q |
323 |
aaacaatagtcttgtttgcctattgatttcaatatttcctatacttcaccaaaaacaccggaaacaaaacgaaaacaaggtggtatttttgtaattaaga |
422 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
28544521 |
aaacaatagtcttgtttgccttttgatttcaatatttcctatacttcaccaaaaacactggaaacaaaatgaaaacaaggtggtatttttgtaattaaga |
28544422 |
T |
|
| Q |
423 |
gtgaaacatgaaacaaaagtagaaaatgctttctcaaaccaaactggtcattaaattgtttannnnnnnnnacatatttatatatttgcagattgtttac |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28544421 |
gtgaaacatgaaacaaaagtagaaaatgctttctcaaaccaaactggtcattaaattgtttatttttttttacatatttatatatttgcagattgtttac |
28544322 |
T |
|
| Q |
523 |
tttcataatacattgaactccacatcttagttatgctaactaacttcattcatttttaaggttctacaccatgggctgtcgttgttttcaattatccaat |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28544321 |
-ttcataatacattgaactccacatcttagttatgctaactaacttcattcatttttaaggttctacaccacgggctgtcgttgttttcaattatccaat |
28544223 |
T |
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| Q |
623 |
ctttgctaagtggtcaagcacatatctacatattaatggttcttctcac |
671 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28544222 |
ctttgctaagtggtcaagcacatatctacatattaatggttcttttcac |
28544174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 50312019 - 50312061
Alignment:
| Q |
382 |
ggaaacaaaacgaaaacaaggtggtatttttgtaattaagagt |
424 |
Q |
| |
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| T |
50312019 |
ggaaacaaagggaaaacaaggtggtatttttctaattaagagt |
50312061 |
T |
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