View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1610_low_5 (Length: 402)

Name: NF1610_low_5
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1610_low_5
NF1610_low_5
[»] chr7 (3 HSPs)
chr7 (13-259)||(5037143-5037390)
chr7 (307-370)||(48152829-48152892)
chr7 (304-369)||(34471546-34471611)
[»] chr2 (3 HSPs)
chr2 (304-370)||(35298242-35298308)
chr2 (303-373)||(14749364-14749434)
chr2 (303-368)||(26352388-26352453)
[»] chr8 (5 HSPs)
chr8 (302-370)||(24728790-24728858)
chr8 (303-370)||(9409727-9409794)
chr8 (304-370)||(11789634-11789700)
chr8 (305-370)||(14179852-14179917)
chr8 (303-368)||(9136989-9137054)
[»] chr3 (4 HSPs)
chr3 (303-371)||(36172197-36172264)
chr3 (300-366)||(31489780-31489846)
chr3 (304-370)||(32834792-32834858)
chr3 (302-354)||(27164303-27164355)
[»] chr5 (2 HSPs)
chr5 (303-369)||(7056899-7056965)
chr5 (307-362)||(27925144-27925199)
[»] chr4 (4 HSPs)
chr4 (303-360)||(53018825-53018882)
chr4 (303-371)||(34075418-34075486)
chr4 (302-370)||(38948722-38948790)
chr4 (303-350)||(24913652-24913699)
[»] chr1 (4 HSPs)
chr1 (303-370)||(40693725-40693792)
chr1 (303-373)||(31183243-31183313)
chr1 (304-371)||(22791340-22791407)
chr1 (304-368)||(17116044-17116108)
[»] chr6 (2 HSPs)
chr6 (305-370)||(12283954-12284019)
chr6 (305-361)||(12312292-12312348)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 5037390 - 5037143
Alignment:
Q  13 aaaatcgacgcattaacctctcacaatagcgatcaaagttgaagaaaacaagccaggaattctaaatttaactcattaaaggaagatacatgtaagagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  5037390 aaaatcgacgcattaacctctcacaatagcgatcaaagttgaagaaaacaagccaggaattctaaatttaactcattaaaggaagatacacgtaagggaa 5037291  T
Q  113 aagaaaacttgaaggcttttttaaaaacctatttccaaagctaaggattcaagcaagaagtcgtgatcgtcttccttaattttcagat-cccaagcaaga 211  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5037290 aagaaaactcgaaggtttttttaaaaacctatttccaaagctaaggactcaagcaagaagtcgtgatcgtcttccttaattttcagatccccaagcaaga 5037191  T
Q  212 catcgtagttatcttcctttatttgcctaagaaacacactcaccagag 259  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  5037190 catcgtaattatcttcctttatttgcctaagcaacacactcactagag 5037143  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 48152829 - 48152892
Alignment:
Q  307 gaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    ||||||||||||||||||||  |||||| | ||||||| ||||||||| ||||||  |||||||    
T  48152829 gaagcccggatactccaaaacggagacgtatctgtatcggatacgtattggatactgatactcc 48152892  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 34471546 - 34471611
Alignment:
Q  304 tatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactc 369  Q
    |||||||||| |||||||||||||||||| | ||  ||||| ||| |||||| |||||| ||||||    
T  34471546 tatgaagccccgatactccaaaatagagatgtactggtatcggatgcgtatcagataccgatactc 34471611  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 35298242 - 35298308
Alignment:
Q  304 tatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    ||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||||||| |||||||    
T  35298242 tatgaagtccggatactccaaaacaaagacgtacctgtatcggatacgtatcggataccgatactcc 35298308  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 14749364 - 14749434
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactccgcg 373  Q
    ||||||||||||||||| ||||||| |||||| |||||||   |||||||||||||| || ||||||||||    
T  14749364 ctatgaagcccggataccccaaaatggagacgtacctgtactggatacgtatcggattccgatactccgcg 14749434  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 26352388 - 26352453
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatact 368  Q
    ||||| || ||| |||||||||||| |||| | ||| |||||||||||||||| |||||| |||||    
T  26352388 ctatgcagtccgaatactccaaaatggagatgtacccgtatcagatacgtatcagataccgatact 26352453  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 24728858 - 24728790
Alignment:
Q  302 cctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    |||||||||||||||||||||||||  |||||| ||  ||||| |||||||||| ||||||||||||||    
T  24728858 cctatgaagcccggatactccaaaacggagacgtactcgtatcggatacgtatcagataccaatactcc 24728790  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 9409727 - 9409794
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    |||||||||||||||| ||||||| ||||||| ||| ||| |  |||||||||||||||| |||||||    
T  9409727 ctatgaagcccggatattccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactcc 9409794  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 11789700 - 11789634
Alignment:
Q  304 tatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    |||||||||||||||||||||||  ||||||  || ||| |||||||||||| |||||| |||||||    
T  11789700 tatgaagcccggatactccaaaacggagacgtgcccgtaccagatacgtatcagataccgatactcc 11789634  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 14179852 - 14179917
Alignment:
Q  305 atgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    ||||||| |||||||  ||||||||||||| | |||||||||||||||||  |||||| |||||||    
T  14179852 atgaagctcggatacaacaaaatagagacgtatctgtatcagatacgtattagataccgatactcc 14179917  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 9137054 - 9136989
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatact 368  Q
    |||||||||  | ||||| |||||| |||||  || ||||||||||||||||| ||||||||||||    
T  9137054 ctatgaagcttgaatacttcaaaatggagacatacttgtatcagatacgtatcagataccaatact 9136989  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 36172264 - 36172197
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactccg 371  Q
    ||||||||||||||||| ||||||| |||||| |||||||  |||||||||||||||||| ||||||||    
T  36172264 ctatgaagcccggatac-ccaaaatggagacgtacctgtactagatacgtatcggataccgatactccg 36172197  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 31489846 - 31489780
Alignment:
Q  300 atcctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaata 366  Q
    ||||||||||||||||||  |  ||||| |||||| ||| |||| ||||||||||| ||||||||||    
T  31489846 atcctatgaagcccggatgatttaaaatggagacgtacccgtattagatacgtatcagataccaata 31489780  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 32834792 - 32834858
Alignment:
Q  304 tatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    ||||||||||||||||  |||||  |||||| |   ||||||||||||||||||||||| |||||||    
T  32834792 tatgaagcccggatacctcaaaacggagacgtatgcgtatcagatacgtatcggataccgatactcc 32834858  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 27164355 - 27164303
Alignment:
Q  302 cctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtat 354  Q
    ||||||||| | ||||||| ||||||||||||| ||| |||||||||| ||||    
T  27164355 cctatgaagtctggatacttcaaaatagagacgtacccgtatcagatatgtat 27164303  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 7056899 - 7056965
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactc 369  Q
    |||||||| | |||||||||||||  |||||| |||||||||||||| |||||||||||| ||||||    
T  7056899 ctatgaagtctggatactccaaaacggagacgtacctgtatcagataagtatcggataccgatactc 7056965  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 27925144 - 27925199
Alignment:
Q  307 gaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggatacc 362  Q
    |||||||||||||||||||| ||||||| ||  ||||| |||||||||| ||||||    
T  27925144 gaagcccggatactccaaaacagagacgtactcgtatcggatacgtatcagatacc 27925199  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 53018882 - 53018825
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggata 360  Q
    |||||||||||||||||||||||||||||||| |   |||| ||||||||||||||||    
T  53018882 ctatgaagcccggatactccaaaatagagacgtattcgtataagatacgtatcggata 53018825  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 34075486 - 34075418
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactccg 371  Q
    |||||||||||| |||||||||||| |||||| |||  |||| |||| |||||||||||| ||||||||    
T  34075486 ctatgaagcccgaatactccaaaatggagacgtacccatatccgatatgtatcggataccgatactccg 34075418  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 38948790 - 38948722
Alignment:
Q  302 cctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    ||||||||||  |||||||||||||| |||||| | | ||||  ||||||||||||||||| |||||||    
T  38948790 cctatgaagcttggatactccaaaatggagacgtatccgtattggatacgtatcggataccgatactcc 38948722  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 24913652 - 24913699
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatac 350  Q
    ||||||||| |||||||||||||| ||||||| ||| |||||||||||    
T  24913652 ctatgaagctcggatactccaaaacagagacgtaccggtatcagatac 24913699  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 40693725 - 40693792
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    ||||||||||| ||||||  |||| ||||||| ||||||| | ||||||||||||||||| |||||||    
T  40693725 ctatgaagcccagatactttaaaacagagacgtacctgtaccggatacgtatcggataccgatactcc 40693792  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 31183243 - 31183313
Alignment:
Q  303 ctatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactccgcg 373  Q
    ||||||||| ||||||||||||||| | | || ||| || |||||||||||||| ||||| ||||||||||    
T  31183243 ctatgaagctcggatactccaaaatggtgccgtacccgtgtcagatacgtatcgcataccgatactccgcg 31183313  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 22791407 - 22791340
Alignment:
Q  304 tatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactccg 371  Q
    ||||||| |||||||||||||||| |||||| ||| |||||| ||| ||||| |||||  ||||||||    
T  22791407 tatgaagtccggatactccaaaatggagacgtacccgtatcatatatgtatccgatactgatactccg 22791340  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 17116044 - 17116108
Alignment:
Q  304 tatgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatact 368  Q
    ||||||||||  |||||||||||  |||||| ||  ||| ||||||||||||||||||| |||||    
T  17116044 tatgaagcccaaatactccaaaacggagacgtacacgtaccagatacgtatcggataccgatact 17116108  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 12284019 - 12283954
Alignment:
Q  305 atgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggataccaatactcc 370  Q
    ||||||| | |||||||||||||  ||||| | | ||||| ||||||||||||||||| |||||||    
T  12284019 atgaagctcagatactccaaaatgaagacgtatccgtatcggatacgtatcggataccgatactcc 12283954  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 12312348 - 12312292
Alignment:
Q  305 atgaagcccggatactccaaaatagagacgcacctgtatcagatacgtatcggatac 361  Q
    ||||||||||||||||  ||||| |||||| | ||||||  ||||||||||||||||    
T  12312348 atgaagcccggatactttaaaatggagacgtatctgtattggatacgtatcggatac 12312292  T

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