View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610_low_6 (Length: 389)
Name: NF1610_low_6
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 7375727 - 7375335
Alignment:
| Q |
12 |
atcatcaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaag |
111 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375727 |
atcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaag |
7375628 |
T |
|
| Q |
112 |
taaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcat |
211 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
7375627 |
taaaagctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcat |
7375528 |
T |
|
| Q |
212 |
cttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt------------ |
293 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
7375527 |
cttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccc |
7375428 |
T |
|
| Q |
294 |
---tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatattcttc |
383 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7375427 |
tcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttc |
7375335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 383
Target Start/End: Original strand, 7278112 - 7278504
Alignment:
| Q |
12 |
atcatcaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaag |
111 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278112 |
atcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaag |
7278211 |
T |
|
| Q |
112 |
taaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcat |
211 |
Q |
| |
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|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
7278212 |
taaatgctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcat |
7278311 |
T |
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| Q |
212 |
cttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt------------ |
293 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
7278312 |
cttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccc |
7278411 |
T |
|
| Q |
294 |
---tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatattcttc |
383 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7278412 |
tcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttc |
7278504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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