View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610_low_7 (Length: 384)
Name: NF1610_low_7
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 191 - 371
Target Start/End: Original strand, 10290210 - 10290390
Alignment:
| Q |
191 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
290 |
Q |
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| T |
10290210 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
10290309 |
T |
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| Q |
291 |
taagaactgttggaccattttgatgtctctcattgtcggacggtattcactattcagtgccatgtgattctaccattgatt |
371 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10290310 |
taagaactgttggagcattttgatgtctctcattgtcggacggtattcactattcagtgccatgtgattctaccattgatt |
10290390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 10289989 - 10290155
Alignment:
| Q |
18 |
attcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaa |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10289989 |
attcgcctccaaaagtcttcatgaacactgctgcacacatatgcaggactaggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaa |
10290088 |
T |
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| Q |
118 |
atgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagta |
184 |
Q |
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| T |
10290089 |
atgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagta |
10290155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 9747520 - 9747370
Alignment:
| Q |
19 |
ttcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaa |
118 |
Q |
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| T |
9747520 |
ttcgcctccaaaagtcttcatggacactgctgcacacagatgcaggactaggaggtacctcagtgtagttctcctaaagagcatatagcagaaaatcaaa |
9747421 |
T |
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| Q |
119 |
tgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
172 |
Q |
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||| ||||||||| ||||| |||||||||||||||| |||||| |||||| |
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| T |
9747420 |
tgattttttatacaa---ctctgaatgaaatataaaggtcgtcatgggcaacag |
9747370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 371
Target Start/End: Original strand, 10298669 - 10298783
Alignment:
| Q |
250 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtctctcattgtcggacggtattcactattcagtg |
349 |
Q |
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| T |
10298669 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtctctcattgtcggacgg-------tattcagtg |
10298761 |
T |
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| Q |
350 |
ccatgtgattctaccattgatt |
371 |
Q |
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|||||||||||||||||||||| |
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| T |
10298762 |
ccatgtgattctaccattgatt |
10298783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 191 - 371
Target Start/End: Complemental strand, 9747171 - 9746997
Alignment:
| Q |
191 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
290 |
Q |
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|
||||| ||||||||||||||| ||||||| || || |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9747171 |
aataagtatgaacgaattcttctgcagaaatgagggttgaaaaggaatgagtaatggagggagtatgatgaacttacatgtctctcaccaccgtcgttca |
9747072 |
T |
|
| Q |
291 |
taagaactgttggacca-ttttgatgtctctcattgtcggacggtattcactattcagtgccatgtgattctaccattgatt |
371 |
Q |
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||| |||||||||||| || |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
9747071 |
caaggactgttggaccacttgtgatatctctcattgtcgggcgg-------tattcagtgccatgtgattctaccattgatt |
9746997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 10298112 - 10298270
Alignment:
| Q |
18 |
attcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaa |
117 |
Q |
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|
||||||||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
10298112 |
attcgcctccagaagtcttcatgaacactgctgcacacat--gctggactaggaggtacctcagtgtagttctccaaaagagcatatagcagaaaatcaa |
10298209 |
T |
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| Q |
118 |
atgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaata |
181 |
Q |
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|||| |||||||||| | ||| |||||| |||||||||||| ||||||||| ||||||| |
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| T |
10298210 |
atgattttttatacaac---tttgttcgaaataaaaaggtcatcatagtcaacaggtaaaaata |
10298270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 10298467 - 10298525
Alignment:
| Q |
191 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggag |
249 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
10298467 |
aataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggag |
10298525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 37744034 - 37743885
Alignment:
| Q |
22 |
gcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatga |
121 |
Q |
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||||| ||||||||||| ||||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37744034 |
gcctctaaaagtcttcatgaacattgctgcatacagatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga |
37743935 |
T |
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| Q |
122 |
ccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
172 |
Q |
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||| | ||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
37743934 |
-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag |
37743885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 34694366 - 34694519
Alignment:
| Q |
22 |
gcctccaaaagtcttcaagaacactgctgcacaca----tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaa |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34694366 |
gcctccaaaagtcttcatgaacactgctgcatacagatgcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaa |
34694465 |
T |
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| Q |
118 |
atgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
172 |
Q |
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|||| ||| | ||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
34694466 |
atga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag |
34694519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 34716778 - 34716931
Alignment:
| Q |
22 |
gcctccaaaagtcttcaagaacactgctgcacaca----tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaa |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34716778 |
gcctccaaaagtcttcatgaacactgctgcatacagatgcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaa |
34716877 |
T |
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| Q |
118 |
atgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
172 |
Q |
| |
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|||| ||| | ||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
34716878 |
atga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag |
34716931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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