View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1610_low_9 (Length: 342)
Name: NF1610_low_9
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 46018893 - 46019209
Alignment:
| Q |
19 |
cacccatcatcatctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46018893 |
cacccatcatcatctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaa |
46018992 |
T |
|
| Q |
119 |
atcatatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaataacatttcaaacaacagtatattttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46018993 |
atcatatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaataatatttcaaacaacagtatattttc |
46019092 |
T |
|
| Q |
219 |
ttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccgaggccaactgcttgtcaagtgttccatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46019093 |
ttacatttcttaatgaatcttcattagttatcaacagctgcaaaaaatccttaatagtgtgtattccatccaaggccaactgcttgtcaagtgttccatc |
46019192 |
T |
|
| Q |
319 |
tctacgtattcatctca |
335 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
46019193 |
tctacgtattcctctca |
46019209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 311
Target Start/End: Original strand, 46031701 - 46031821
Alignment:
| Q |
191 |
ataacatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccg |
290 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| | |||||||||| ||||||| ||||| ||| |||||| ||||||| ||||||||||||||| | |
|
|
| T |
46031701 |
ataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctg |
46031800 |
T |
|
| Q |
291 |
aggccaactgcttgtcaagtg |
311 |
Q |
| |
|
| |||||| |||||||||||| |
|
|
| T |
46031801 |
atgccaacagcttgtcaagtg |
46031821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 46031549 - 46031637
Alignment:
| Q |
31 |
tctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| | |||||| | |||| || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
46031549 |
tctacatcacaatctttagcatgtgcaacaattgtattccatgaattccttgcaatcttgcctattttctattttcccaaagccaaaaa |
46031637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University