View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1611-INSERTION-2 (Length: 172)

Name: NF1611-INSERTION-2
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1611-INSERTION-2
NF1611-INSERTION-2
[»] chr1 (1 HSPs)
chr1 (7-136)||(6257000-6257141)
[»] chr8 (3 HSPs)
chr8 (91-141)||(44254294-44254344)
chr8 (84-134)||(13654816-13654866)
chr8 (84-134)||(13713458-13713508)
[»] chr4 (1 HSPs)
chr4 (85-147)||(23226681-23226743)
[»] scaffold0118 (1 HSPs)
scaffold0118 (102-147)||(37304-37349)
[»] chr6 (1 HSPs)
chr6 (89-136)||(34675793-34675840)
[»] chr2 (3 HSPs)
chr2 (104-147)||(37065410-37065453)
chr2 (90-146)||(30737043-30737099)
chr2 (102-141)||(14307676-14307715)
[»] chr7 (2 HSPs)
chr7 (100-136)||(32962886-32962922)
chr7 (93-136)||(5180678-5180721)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 9e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 6257141 - 6257000
Alignment:
Q  7 aagaagccacaaaaactgaatagcatatgattccaattagtattttcttttagca------------ttatatgcagggattagaatttaaacaccggac 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||| |||||||||||||     
T  6257141 aagaagccacaaaaactgaatagcatatgattccaattagtattttcttttagcaagacatgcattattatatgcagggattagagtttaaacaccggat 6257042  T
Q  95 atcctatttattcactttaaaaaatgtgaattttagccacta 136  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  6257041 atcctatttatccactttaaaaaatgtgaattctagccacta 6257000  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 44254344 - 44254294
Alignment:
Q  91 ggacatcctatttattcactttaaaaaatgtgaattttagccactatgcta 141  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  44254344 ggacatcctacttattcaccttgaaaaatgtgaattttagccactatgcta 44254294  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 13654866 - 13654816
Alignment:
Q  84 aaacaccggacatcctatttattcactttaaaaaatgtgaattttagccac 134  Q
    |||| ||||||| || | |||||||||||||||||||||||||||| ||||    
T  13654866 aaactccggacaccccacttattcactttaaaaaatgtgaattttaaccac 13654816  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 13713508 - 13713458
Alignment:
Q  84 aaacaccggacatcctatttattcactttaaaaaatgtgaattttagccac 134  Q
    |||| ||||||| || | |||||||||||||||||||||||||||| ||||    
T  13713508 aaactccggacaccccacttattcactttaaaaaatgtgaattttaaccac 13713458  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 23226743 - 23226681
Alignment:
Q  85 aacaccggacatcctatttattcactttaaaaaatgtgaattttagccactatgctatttgac 147  Q
    |||||||||||||  | |||||||| |||||||||||||||| |||||||||| ||| |||||    
T  23226743 aacaccggacatctcacttattcaccttaaaaaatgtgaattatagccactatactacttgac 23226681  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 37349 - 37304
Alignment:
Q  102 ttattcactttaaaaaatgtgaattttagccactatgctatttgac 147  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||    
T  37349 ttattcaccttaaaaaatgtgaaatttagccactaggctatttgac 37304  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 34675840 - 34675793
Alignment:
Q  89 ccggacatcctatttattcactttaaaaaatgtgaattttagccacta 136  Q
    ||||||| || | ||||||||||||||||||||||||| |||||||||    
T  34675840 ccggacaccccagttattcactttaaaaaatgtgaattctagccacta 34675793  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 37065453 - 37065410
Alignment:
Q  104 attcactttaaaaaatgtgaattttagccactatgctatttgac 147  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||    
T  37065453 attcaccttaaaaaatgtgaattttaaccattatgctatttgac 37065410  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 30737043 - 30737099
Alignment:
Q  90 cggacatcctatttattcactttaaaaaatgtgaattttagccactatgctatttga 146  Q
    ||||||||| | |||||||| |||||||||||||||| ||| ||||| |||| ||||    
T  30737043 cggacatcccacttattcaccttaaaaaatgtgaattctagtcactaggctacttga 30737099  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 14307715 - 14307676
Alignment:
Q  102 ttattcactttaaaaaatgtgaattttagccactatgcta 141  Q
    ||||||||||||||||| ||||||| ||||||||| ||||    
T  14307715 ttattcactttaaaaaaagtgaattctagccactaagcta 14307676  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 32962922 - 32962886
Alignment:
Q  100 atttattcactttaaaaaatgtgaattttagccacta 136  Q
    |||||||||| || |||||||||||||||||||||||    
T  32962922 atttattcaccttgaaaaatgtgaattttagccacta 32962886  T

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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 5180721 - 5180678
Alignment:
Q  93 acatcctatttattcactttaaaaaatgtgaattttagccacta 136  Q
    |||||| | |||||||||||||||||| ||||||||| ||||||    
T  5180721 acatccaacttattcactttaaaaaatatgaattttatccacta 5180678  T

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