View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611-INSERTION-3 (Length: 155)
Name: NF1611-INSERTION-3
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611-INSERTION-3 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 2e-44; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 11134401 - 11134279
Alignment:
| Q |
8 |
gagatgatagtgaacgaccaagggagtagaacaacaccttcttatgttgccttcgctgactctcaaagattgattggtgatcctgcgtttaatatggctg |
107 |
Q |
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| T |
11134401 |
gagatgatagtgaacgaccaagggaatagaacaacaccttcttatgttgcattcactgactctcaaagaatgattggtgatcctgctttcaacatggctg |
11134302 |
T |
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| Q |
108 |
ctcgcaacccaaccaacactgtt |
130 |
Q |
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| T |
11134301 |
cttgcaacccaaccaacactgtt |
11134279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 11159739 - 11159616
Alignment:
| Q |
7 |
agagatgatagtgaacgaccaagggagtagaacaacaccttcttatgttgccttcgctgactctcaaagattgattggtgatcctgcgtttaatatggct |
106 |
Q |
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| T |
11159739 |
agagataatagtgaacgaccaagggaatagaacaacaccttcttatgttgccttcactgactctcaaagaatgattggtgatgctgcttccaatatggct |
11159640 |
T |
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| Q |
107 |
gctcgcaacccaaccaacactgtt |
130 |
Q |
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| T |
11159639 |
gcatccaacccaaccaacactgtt |
11159616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 11198279 - 11198168
Alignment:
| Q |
19 |
gaacgaccaagggagtagaacaacaccttcttatgttgccttcgctgactctcaaagattgattggtgatcctgcgtttaatatggctgctcgcaaccca |
118 |
Q |
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| T |
11198279 |
gaacgaccaagggaatagaacaacaccttcttatgttgccttcactgactctgaaagaatgattggtgattctgctttcaatatggctgcatccaaccca |
11198180 |
T |
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| Q |
119 |
accaacactgtt |
130 |
Q |
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| T |
11198179 |
accaacactgtt |
11198168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 11278695 - 11278575
Alignment:
| Q |
7 |
agagatgatagtgaacgaccaagggagtagaacaacaccttcttatgttgccttcgctgactctcaaagattgattggtgatcctgcgtttaatatggct |
106 |
Q |
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| T |
11278695 |
agagataatagtgaacgaccaagggaacagaacaacaccttcttgtgttgcattcaaaaactctgaaagaatgattggtgatgctgctttcaatacggct |
11278596 |
T |
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| Q |
107 |
gctcgcaacccaaccaacact |
127 |
Q |
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||| |||||||| |||||| |
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| T |
11278595 |
gcttcaaacccaacaaacact |
11278575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 11174279 - 11174166
Alignment:
| Q |
14 |
atagtgaacgaccaagggagtagaacaacaccttcttatgttgccttcgctgactctcaaagattgattggtgatcctgcgtttaatatggctgctcgca |
113 |
Q |
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| T |
11174279 |
atagtgaacgacctagggaagagaacaacaccttcttttgttgcattcaaagactctgaaagaatgattggtgatgctgctttcaatatagctgcttcga |
11174180 |
T |
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| Q |
114 |
acccaaccaacact |
127 |
Q |
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| T |
11174179 |
acccaacaaacact |
11174166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 11211808 - 11211765
Alignment:
| Q |
14 |
atagtgaacgaccaagggagtagaacaacaccttcttatgttgc |
57 |
Q |
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| T |
11211808 |
atagtgaacgaccaagggaacagaacaacaccttcttgtgttgc |
11211765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 8568906 - 8568851
Alignment:
| Q |
38 |
acaacaccttcttatgttgccttcgctgactctcaaagattgattggtgatcctgc |
93 |
Q |
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| T |
8568906 |
acaacaccttcttgtgttgctttcactaaatctcaaagattgattggtgatgctgc |
8568851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 8582732 - 8582676
Alignment:
| Q |
37 |
aacaacaccttcttatgttgccttcgctgactctcaaagattgattggtgatcctgc |
93 |
Q |
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| T |
8582732 |
aacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgctgc |
8582676 |
T |
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