View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611-INSERTION-4 (Length: 529)
Name: NF1611-INSERTION-4
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611-INSERTION-4 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Original strand, 46872925 - 46873445
Alignment:
| Q |
8 |
cacattttctacaaaacacagatttgtactaagttcagatttggtgcttgtagaaacggaacaaattgcaactttgctcatggggctgaagagataaggc |
107 |
Q |
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| T |
46872925 |
cacattttctacaaaacacggatttgtactaagttcatatttggtgcttgtagaaacggaacaaattgcaactttgctcatggggctgaagagataaggc |
46873024 |
T |
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| Q |
108 |
aaccacctccaaattcgcagaagctagttggttcgtgcaacgaagatnnnnnnntcataaacaagatgaaactgtgcaagaagtattgcaatggggagaa |
207 |
Q |
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| T |
46873025 |
aaccacctccaaattcgcagaagctagttggtccgtgcaacgaagataaaaaaatcataaacaagatgaaactgtgcaagaagtattgcaatggggagaa |
46873124 |
T |
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| Q |
208 |
atgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaagactaagctgtgtctcaagtggaaggatacg |
307 |
Q |
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| T |
46873125 |
atgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaagactaagctgtgtctcaagtggaaggatacg |
46873224 |
T |
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| Q |
308 |
ggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaataactcattttgattattggttttggttttatcatataattcta |
407 |
Q |
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| T |
46873225 |
ggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaataactcattttgattattggttttggttttatcatataattcta |
46873324 |
T |
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| Q |
408 |
ctgttttatattgttcaatcatataaaatannnnnnnnnnnnaattttctagatgctgtgtagaatgtcattttatgtgatatgatgtgcaaattacagc |
507 |
Q |
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| T |
46873325 |
ctgttttatattgttcaatcatataaaata-tgtttttttttaattttctagatgctgtgtagaatgtcattttatgtgatatgatgtgcaaattacagc |
46873423 |
T |
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| Q |
508 |
gattaattaaatgatttgaatg |
529 |
Q |
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| T |
46873424 |
gattaattaaatgatttgaatg |
46873445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 264 - 437
Target Start/End: Original strand, 46890593 - 46890766
Alignment:
| Q |
264 |
gcacttatcggaagactaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaa |
363 |
Q |
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| T |
46890593 |
gcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaa |
46890692 |
T |
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| Q |
364 |
taactcattttgattattggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
437 |
Q |
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| T |
46890693 |
taactcattttgcttattggttttggttttatcatataattctattgctttattttgtttaattatataaaata |
46890766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 46890217 - 46890348
Alignment:
| Q |
8 |
cacattttctacaaaacacagatttgtactaagttcagatttggtgcttgtagaaacggaacaaattgcaactttgctcatggggctgaagagataaggc |
107 |
Q |
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| T |
46890217 |
cacattttctacaaaacacgaatttgtactaagttcagatttggtacttgtagaaacggacaaaattgcaactttgctcatggagctgaagagttaaggc |
46890316 |
T |
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| Q |
108 |
aaccacctccaaattcgcagaagctagttggt |
139 |
Q |
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| T |
46890317 |
aaccaccaccacattggcagaagttagttggt |
46890348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 46890412 - 46890502
Alignment:
| Q |
173 |
atgaaactgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggg |
263 |
Q |
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| T |
46890412 |
atgaaactgtgcaagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttaggg |
46890502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 46863667 - 46863763
Alignment:
| Q |
3 |
caacacacattttctacaaaacacagatttgtactaagttcagatttggtgcttgtagaaacggaacaaattgcaactttgctcatggggctgaaga |
99 |
Q |
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| T |
46863667 |
caacccacattttctacaagactcgaatctgtactaagttcaggtttggtacttgtagaaacggtaaagattgcaactttgctcatggggttgaaga |
46863763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 46898797 - 46898876
Alignment:
| Q |
35 |
actaagttcagatttggtgcttgtagaaacggaacaaattgcaactttgctcatggggctgaagagataaggcaaccacc |
114 |
Q |
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| T |
46898797 |
actaagttcaggtttggtacttgtagaaacggtgaaaattgcaactacgctcacggggctgatgagataaggcagccacc |
46898876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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