View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1611-INSERTION-6 (Length: 550)
Name: NF1611-INSERTION-6
Description: NF1611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1611-INSERTION-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Complemental strand, 25720808 - 25720267
Alignment:
| Q |
8 |
gcaacttcaattttctcttcaagttcttcttcatccgttacatggcagttaaatctcatagcaccaataattttcttccgttaaggtaaatccatttctc |
107 |
Q |
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| T |
25720808 |
gcaacttcaattttctcttcaaattcttcttcatccgttacatggcagttaaatctcatagcaccaataattttcttccgttaaggtaaatccatttctc |
25720709 |
T |
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| Q |
108 |
tatccttctgctttgtctcaggttcgaatctctctagtaccaataattactgtgtttgttctagcttcatttggctccgttagtagacggtgggattggt |
207 |
Q |
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| T |
25720708 |
tatccttctgctttgtctcaggttcgaatctctttagtaccaataattactgtgtttgttctagcttcatttggctccgttagtagacggtgggattggt |
25720609 |
T |
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| Q |
208 |
ccactcggtccttggatcggatacagaatacggagtttaaaaaataaagtgaatcattgacatgtagaagctaggtttacttttactgacagtaatgttt |
307 |
Q |
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| T |
25720608 |
ccactcggtccttggatcggatacagaatacggagtttaaaaaataaagtgaatcattgacatgtggaagctaggtttacttttactgacagtaatgttt |
25720509 |
T |
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| Q |
308 |
gtttgctgttttgtattatgcacatgaattgcttgacaaaattcctaactgaaaatctaattctttaacttgaagtttttcgtttctctttcatgtttta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25720508 |
gtttgctgttttgtattatgcacatgaattgcttgacaaaattcctaactgaaaatctaattctttaacttgaagtttttcgtttctctttcatgtttta |
25720409 |
T |
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| Q |
408 |
ctagaatttgtgaagaattgttgttgagaatatctacgatgcattgttttcttgtaggtaattcaggtagtaactatatcaatgtgtgccagtgttgatt |
507 |
Q |
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| T |
25720408 |
ctagaatttgtgaagaattgttgttgagaatatctacgatgcattgttttcttgtaggtaattcaggtagt-actatatcaatgtgtgccagtgttgatt |
25720310 |
T |
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| Q |
508 |
tttgagtgcctccgcgagtatatgattaaagaaactgttttta |
550 |
Q |
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| T |
25720309 |
tttgagtgcctccgcgagtatatgattaaagaaactgttttta |
25720267 |
T |
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