View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16110_high_1 (Length: 421)
Name: NF16110_high_1
Description: NF16110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16110_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 168 - 412
Target Start/End: Complemental strand, 16003858 - 16003614
Alignment:
| Q |
168 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
267 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16003858 |
caaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
16003759 |
T |
|
| Q |
268 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16003758 |
tccatcacaaaatagaggtagttttagattttatattgatttcctttcaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
16003659 |
T |
|
| Q |
368 |
attttcctccacaagtcgagtcataccgctatttctgtgctcctc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16003658 |
attttcctccacaagtcgagtcataccgctatttctgtgttcctc |
16003614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 168 - 412
Target Start/End: Complemental strand, 26795241 - 26794994
Alignment:
| Q |
168 |
caaacgtaaacaccctcttcttctt---ttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgca |
264 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26795241 |
caaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttaccaccataaacatggttctgttcttgca |
26795142 |
T |
|
| Q |
265 |
agatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26795141 |
agatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctagt |
26795042 |
T |
|
| Q |
365 |
tccattttcctccacaagtcgagtcataccgctatttctgtgctcctc |
412 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
26795041 |
tccgttttcctccacaagtcgagtcataccgctatttatgtgttcctc |
26794994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 16004575 - 16004408
Alignment:
| Q |
1 |
gcatgatgctttattgtaatattgatgtataagaattttcatgtacgcaacataagtacatagcataaaatgtcttcttctttttcctttcnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16004575 |
gcatgatgctttattgtaatattgatgtataaaaattttcatgtacacaacataagtacataacataaaatgtcttcttctttttcctttcaaaaaaatt |
16004476 |
T |
|
| Q |
101 |
nnnnnntaacatttcttcttaacaaacctttctacaaactgcgcacataagagaaggaaagtgtctgcaa |
170 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
16004475 |
aaaaaataacatgtcttcttgacaaacctttctacaaact--gcacataaaagaagaaaagtgtctgcaa |
16004408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 168 - 402
Target Start/End: Complemental strand, 40722202 - 40721968
Alignment:
| Q |
168 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40722202 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaaga |
40722103 |
T |
|
| Q |
268 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40722102 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggtttc |
40722003 |
T |
|
| Q |
368 |
attttcctccacaagtcgagtcataccgctatttc |
402 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |
|
|
| T |
40722002 |
gttttccacgacaagtcgagtcataccgctatttc |
40721968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 168 - 351
Target Start/End: Original strand, 27221880 - 27222063
Alignment:
| Q |
168 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
267 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27221880 |
caaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatatggttctgttcttgcaaga |
27221979 |
T |
|
| Q |
268 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221980 |
tccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
27222063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 27222822 - 27222875
Alignment:
| Q |
352 |
tattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgt |
405 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgt |
27222875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University