View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16110_low_3 (Length: 344)
Name: NF16110_low_3
Description: NF16110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16110_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 49915687 - 49916001
Alignment:
| Q |
12 |
agagaatacaacattaagaagggccatgctggtgttacaccaaaaactatgtacgaaaagtcacatgacaaatnnnnnnnngagtatgatcctagattaa |
111 |
Q |
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| T |
49915687 |
agagaatacaacattaagaagggccatg-tggtgttacaccaaaaactatgtacgaaaagtcacatgacaaataaaaaaaagagtatgatcctagattaa |
49915785 |
T |
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| Q |
112 |
ccacccaatgctcgctttagtgcagcacgttgttctggtgtcaattttgttgggaacttaacctcaaatatgatcctcaaatcacccctatgaccgggtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49915786 |
ccacccaatgctcgctttagtgcagcacgttgttctggtgtcaattttgttgggaacttaacctcaaatatgatcctcaaatcacccctatgaccgggtt |
49915885 |
T |
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| Q |
212 |
cctttgttattggcattccttcatttgcaacaacaagctcataaccaggactcacaatgtttttcactgggacacttaaactacgtttgtaaagtgtttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49915886 |
cctttgttattggcattccttcatttgcaacaacaagctcataaccaggactcacaatgtttttcactgggacacttaaactacgtttgtaaagtgtttt |
49915985 |
T |
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| Q |
312 |
gatatttactgaagtt |
327 |
Q |
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|||||||||||||||| |
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| T |
49915986 |
gatatttactgaagtt |
49916001 |
T |
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